Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1710
         (690 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   4.1  
AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    21   9.5  
AF251548-1|AAF70178.1|  491|Tribolium castaneum cytochrome P450 ...    21   9.5  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 12/44 (27%), Positives = 17/44 (38%)
 Frame = -2

Query: 452  VLGRSIDGQSPHVVKSRVKWQTGAHPQKHVCAEVITRCPEVIFV 321
            +LGR  D   P     +     G  PQ+ V    +  C   +FV
Sbjct: 2200 ILGRDNDKTKPKPTTMKPTTTIGYEPQEPVLPAEVVPCQGRLFV 2243


>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = +2

Query: 500 STTHRPTWSVFQDGTRHD*WLHRAQSSDLPLGASTLRR 613
           ST+ +P  +     T H  +   A +  +  GA+ LRR
Sbjct: 187 STSSQPVGTQIHQQTNHTFYPWMAIADSMTFGANGLRR 224


>AF251548-1|AAF70178.1|  491|Tribolium castaneum cytochrome P450
           monooxigenase CYP4Q4 protein.
          Length = 491

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +3

Query: 375 WMSTGLPFNATFNYMRRLPIDAPAQH 452
           W+ TGL  +A   +  R  I  PA H
Sbjct: 110 WLGTGLLTSAGPKWQNRRKILTPAFH 135


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,283
Number of Sequences: 336
Number of extensions: 3496
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18114270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)