Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1708
(609 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q76IN5 Cluster: Reverse transcriptase; n=1; Anopheles g... 110 2e-23
UniRef50_Q76IN4 Cluster: Reverse transcriptase; n=20; Entamoeba ... 51 2e-05
UniRef50_Q76IN3 Cluster: Reverse transcriptase; n=142; Entamoeba... 50 3e-05
UniRef50_UPI0000499012 Cluster: hypothetical protein 157.t00015;... 46 5e-04
UniRef50_UPI0000E484E7 Cluster: PREDICTED: similar to polyprotei... 44 0.003
UniRef50_Q7T1J8 Cluster: Polyprotein; n=5; Clupeocephala|Rep: Po... 40 0.035
UniRef50_Q76IN0 Cluster: Reverse transcriptase; n=5; Danio rerio... 39 0.11
UniRef50_UPI0000499D34 Cluster: reverse transcriptase; n=16; Ent... 38 0.19
UniRef50_A6N9L3 Cluster: Non-ribosomal peptide synthetase; n=1; ... 34 2.3
UniRef50_Q28TP2 Cluster: Putative uncharacterized protein; n=5; ... 34 3.0
UniRef50_UPI0000DB74A5 Cluster: PREDICTED: similar to small nucl... 33 5.3
UniRef50_Q75F87 Cluster: AAL171Wp; n=1; Eremothecium gossypii|Re... 32 9.3
>UniRef50_Q76IN5 Cluster: Reverse transcriptase; n=1; Anopheles
gambiae|Rep: Reverse transcriptase - Anopheles gambiae
(African malaria mosquito)
Length = 1209
Score = 110 bits (265), Expect = 2e-23
Identities = 55/139 (39%), Positives = 85/139 (61%), Gaps = 1/139 (0%)
Frame = -2
Query: 593 VPYYQYQPQPVLDNGHVTLYWDRSIITDRYIVANKPDIVIIDRSARRAVL-VDVTIPHDE 417
+P Y+Y P PV +N + LYWDR IITD I AN+PDI++ ++ +RA + +D+ + D
Sbjct: 1068 LPCYRYLPDPVQENDCIKLYWDREIITDILIRANRPDILVYEKRKKRATIDIDIAVTLDH 1127
Query: 416 NLVKAEKDKLIKYLDLAHETTAMWHVDSTIIVPIVVSVHGLIAKSFDQHLKKLSLSSWVK 237
N+ K++KY DLA E W+++ IVP+++S G++ + + L +L L +
Sbjct: 1128 NVQTTFSTKVMKYHDLAEELKQTWYLEDIRIVPVIISATGIVPMALLRSLDELELQRELP 1187
Query: 236 GLIQKAVILDTARIVRRFL 180
IQKAVIL T +RRFL
Sbjct: 1188 -RIQKAVILRTCSTLRRFL 1205
>UniRef50_Q76IN4 Cluster: Reverse transcriptase; n=20; Entamoeba
histolytica|Rep: Reverse transcriptase - Entamoeba
histolytica
Length = 861
Score = 50.8 bits (116), Expect = 2e-05
Identities = 25/93 (26%), Positives = 50/93 (53%), Gaps = 1/93 (1%)
Frame = -2
Query: 560 LDNGHVTLYWDRSIITDRYIVANKP-DIVIIDRSARRAVLVDVTIPHDENLVKAEKDKLI 384
++ + + W+ ++ +K DI + D + + A+++D+TI D+N+ KA DK+
Sbjct: 706 IEKDKILIVWNHEVVNRSEDKFHKRIDIYVRDLNKKEAMIIDMTIVRDKNISKAFTDKIN 765
Query: 383 KYLDLAHETTAMWHVDSTIIVPIVVSVHGLIAK 285
Y L + + I++P+V++V GLI K
Sbjct: 766 MYSKLHEHIRKIERLVRVIVIPVVITVSGLINK 798
>UniRef50_Q76IN3 Cluster: Reverse transcriptase; n=142; Entamoeba
histolytica|Rep: Reverse transcriptase - Entamoeba
histolytica
Length = 801
Score = 50.4 bits (115), Expect = 3e-05
Identities = 28/108 (25%), Positives = 55/108 (50%), Gaps = 1/108 (0%)
Frame = -2
Query: 572 PQPVLDNGHVTLYWDRS-IITDRYIVANKPDIVIIDRSARRAVLVDVTIPHDENLVKAEK 396
P ++N + + +++ I++D A +PDI + ++ ++DV I D NL
Sbjct: 693 PPKCINNDKMVITYNKDLIVSDHSFHARRPDIYYQNMKEKKGYIIDVAICQDNNLELNYI 752
Query: 395 DKLIKYLDLAHETTAMWHVDSTIIVPIVVSVHGLIAKSFDQHLKKLSL 252
K+ KY +L + + I+P+++S++GLI K + +K L L
Sbjct: 753 HKINKYKELQEKIRNNRELIYVEIIPVILSINGLIHKESVRRVKSLKL 800
>UniRef50_UPI0000499012 Cluster: hypothetical protein 157.t00015;
n=28; Entamoeba histolytica HM-1:IMSS|Rep: hypothetical
protein 157.t00015 - Entamoeba histolytica HM-1:IMSS
Length = 375
Score = 46.4 bits (105), Expect = 5e-04
Identities = 32/127 (25%), Positives = 62/127 (48%), Gaps = 4/127 (3%)
Frame = -2
Query: 581 QYQPQP---VLDNGHVTLYWDRSIITDRYIVANK-PDIVIIDRSARRAVLVDVTIPHDEN 414
QY+ P V +T+ W++ I+ +K PDI ++D+ + +L D T N
Sbjct: 203 QYKKPPYETVFQYKDITMIWNKQIMPKSDGQYHKRPDIYVLDKKNKTGLLFDKTNVEYHN 262
Query: 413 LVKAEKDKLIKYLDLAHETTAMWHVDSTIIVPIVVSVHGLIAKSFDQHLKKLSLSSWVKG 234
+ A K Y +L + + + I+P+V+S++GLI S + +K+L + ++
Sbjct: 263 INGAYWKKRNMYKELKNMLMKIEKIKDVRIIPVVISINGLINNSSVKLIKELKIDIDIEK 322
Query: 233 LIQKAVI 213
++ VI
Sbjct: 323 EVKNLVI 329
>UniRef50_UPI0000E484E7 Cluster: PREDICTED: similar to polyprotein;
n=1; Strongylocentrotus purpuratus|Rep: PREDICTED:
similar to polyprotein - Strongylocentrotus purpuratus
Length = 1027
Score = 44.0 bits (99), Expect = 0.003
Identities = 24/80 (30%), Positives = 45/80 (56%), Gaps = 2/80 (2%)
Frame = -2
Query: 530 DRSIITDRYIVAN-KPDIVIIDRSARRAVLVDVTIPHDENLVKAEKDKLIKYLDLAHETT 354
++ I +V N +PD+VI +++RA+L+++T+PH N+ +A + K KY +L E
Sbjct: 874 EKLIFPPAIVVTNLRPDVVIWSPTSKRAILLELTVPHGANMQRAHERKSRKYEELLLEAE 933
Query: 353 AM-WHVDSTIIVPIVVSVHG 297
W ++ + PI + G
Sbjct: 934 QNGWRIE---LWPIEIGCRG 950
>UniRef50_Q7T1J8 Cluster: Polyprotein; n=5; Clupeocephala|Rep:
Polyprotein - Tetraodon nigroviridis (Green puffer)
Length = 1112
Score = 40.3 bits (90), Expect = 0.035
Identities = 23/82 (28%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Frame = -2
Query: 491 KPDIVIIDRSARRAVLVDVTIPHDENLVKAEKDKLIKYLDLAHE-TTAMWHVDSTIIVPI 315
+PDIV+ +S+++ +L+++T+P +E + +A + K KY +L + A W + +PI
Sbjct: 994 RPDIVLHSQSSKQVILLELTVPWEERMEEAYERKAGKYAELVEDCRRAGWR---SRCLPI 1050
Query: 314 VVSVHGLIAKSFDQHLKKLSLS 249
V G KS + L ++
Sbjct: 1051 EVGGRGFAGKSLCKAFSLLGIT 1072
>UniRef50_Q76IN0 Cluster: Reverse transcriptase; n=5; Danio
rerio|Rep: Reverse transcriptase - Danio rerio
(Zebrafish) (Brachydanio rerio)
Length = 823
Score = 38.7 bits (86), Expect = 0.11
Identities = 18/82 (21%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Frame = -2
Query: 491 KPDIVIIDRSARRAVLVDVTIPHDENLVKAEKDKLIKYLDLAHETTAM-WHVDSTIIVPI 315
+PDI+++ + R+ L+++T+P +E + +A++ K KY +L + W + +P+
Sbjct: 722 RPDIILVSEATRQLTLLELTVPWEERMEEAQERKRGKYQELVEQCRMNGWRIR---CMPV 778
Query: 314 VVSVHGLIAKSFDQHLKKLSLS 249
V G+ + + + L ++
Sbjct: 779 EVGSRGIASNTLSKAYGTLGIT 800
>UniRef50_UPI0000499D34 Cluster: reverse transcriptase; n=16;
Entamoeba histolytica HM-1:IMSS|Rep: reverse
transcriptase - Entamoeba histolytica HM-1:IMSS
Length = 223
Score = 37.9 bits (84), Expect = 0.19
Identities = 22/66 (33%), Positives = 35/66 (53%)
Frame = -2
Query: 449 VLVDVTIPHDENLVKAEKDKLIKYLDLAHETTAMWHVDSTIIVPIVVSVHGLIAKSFDQH 270
+LV+V I D NL K+ KY +L + + I+P+++S++GLI K +
Sbjct: 96 LLVNVAICQDNNLELNYIHKINKYKELQEKLRNNREIIYVEIIPVILSINGLIHKESVRR 155
Query: 269 LKKLSL 252
LK L L
Sbjct: 156 LKSLKL 161
>UniRef50_A6N9L3 Cluster: Non-ribosomal peptide synthetase; n=1;
Claviceps purpurea|Rep: Non-ribosomal peptide synthetase
- Claviceps purpurea (Ergot fungus) (Sphacelia purpurea)
Length = 6847
Score = 34.3 bits (75), Expect = 2.3
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
Frame = -2
Query: 434 TIPHDENLVKAEKDKLIKYLDL---AHETTA-MWHVDSTIIVPIVVSVHGLIAKSFDQHL 267
+I H LV+ D + D+ E T +W ++T+ PI VH LIA++ +
Sbjct: 4600 SIEHLRQLVRLSHDDALTMRDIQVVTEECTRKIWKWNATVPQPIDTCVHDLIAETVRKQP 4659
Query: 266 KKLSLSSWVKGLI 228
+ L++SSW L+
Sbjct: 4660 RALAVSSWDGNLL 4672
>UniRef50_Q28TP2 Cluster: Putative uncharacterized protein; n=5;
Rhodobacterales|Rep: Putative uncharacterized protein -
Jannaschia sp. (strain CCS1)
Length = 93
Score = 33.9 bits (74), Expect = 3.0
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = +2
Query: 359 SRGPGLNILLICPFLPSRGSRHEEW 433
+R G+ I+ +CPF+ ++ SRH EW
Sbjct: 64 ARAEGVTIIALCPFVRAQASRHPEW 88
>UniRef50_UPI0000DB74A5 Cluster: PREDICTED: similar to small nuclear
RNA activating complex, polypeptide 3; n=1; Apis
mellifera|Rep: PREDICTED: similar to small nuclear RNA
activating complex, polypeptide 3 - Apis mellifera
Length = 119
Score = 33.1 bits (72), Expect = 5.3
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +3
Query: 138 GVYDTSHQWLGLQSEKPPHNACSIEDNCF 224
GVY+ QW+ ++ E+ PHN C D+CF
Sbjct: 66 GVYNA--QWITMKHERIPHNPCYFCDSCF 92
>UniRef50_Q75F87 Cluster: AAL171Wp; n=1; Eremothecium gossypii|Rep:
AAL171Wp - Ashbya gossypii (Yeast) (Eremothecium
gossypii)
Length = 991
Score = 32.3 bits (70), Expect = 9.3
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -2
Query: 287 KSFDQHLKKLSLSSWVKGLIQKAVILDTARIVRR 186
KS+ HL KL S W + +KAV+ D A + +R
Sbjct: 581 KSYHSHLVKLMFSCWQQAYARKAVLYDKASLFQR 614
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 561,335,809
Number of Sequences: 1657284
Number of extensions: 11409176
Number of successful extensions: 27838
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 27136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27831
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 43562448615
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -