Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1708
         (609 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC216.01c ||SPBC713.13c|DNA damage response protein |Schizosac...    28   0.93 
SPCC1620.06c |||ribose-phosphate pyrophosphokinase |Schizosaccha...    28   1.2  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        25   6.5  
SPBC29A10.14 |rec8||meiotic cohesin complex subunit Rec8|Schizos...    25   8.7  

>SPBC216.01c ||SPBC713.13c|DNA damage response protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 836

 Score = 28.3 bits (60), Expect = 0.93
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = -2

Query: 398 KDKLIKYLDLA--HETTAMWHVDSTIIVPIVVSVHGLIAKSFDQHLKKLSLS 249
           K  L+K LD A  HE  ++ +  S I+V I+     ++ + FDQ  K  S S
Sbjct: 397 KFNLLKALDYAMSHENNSVRNAGSDILVSIIDHEPAIVWQKFDQDRKDASSS 448


>SPCC1620.06c |||ribose-phosphate pyrophosphokinase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 321

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 24/79 (30%), Positives = 37/79 (46%)
 Frame = -2

Query: 557 DNGHVTLYWDRSIITDRYIVANKPDIVIIDRSARRAVLVDVTIPHDENLVKAEKDKLIKY 378
           DNG   +Y   +I+T   I++ K  I +I+ SA   V+V  TIPHD+      K + I  
Sbjct: 241 DNGAKAVY---AIVTHG-ILSGKA-IKVINESALEKVIVTNTIPHDDKRSLCSKIETIDI 295

Query: 377 LDLAHETTAMWHVDSTIIV 321
             +  E     H   ++ V
Sbjct: 296 SGVLAECIRRIHHGESVSV 314


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +2

Query: 83   IKNTIFKKHYIKIDCR*WRCLRHKPPVV 166
            +   ++ +  I++ C  WRCL  K PV+
Sbjct: 1163 LSKVVWTRPMIRLFCLVWRCLLAKEPVL 1190


>SPBC29A10.14 |rec8||meiotic cohesin complex subunit
           Rec8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 561

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = -2

Query: 305 VHGLIAKSFDQHLKKLSLSSWVKGLIQKAVILDTARIVRR 186
           V  L+    +  L   +LS W K  +++ + L+  + VRR
Sbjct: 288 VQKLLEPDENIELSTRTLSQWRKNYVERMIALEATKYVRR 327


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,306,103
Number of Sequences: 5004
Number of extensions: 47519
Number of successful extensions: 116
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)