Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1708
         (609 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0585 - 4328725-4329030,4329333-4329551,4329752-4329820,432...    29   2.9  
11_04_0288 - 15802010-15803506                                         28   6.7  
01_06_0109 - 26526691-26526775,26526894-26527019,26527228-265273...    27   8.8  
01_05_0103 - 18137176-18137283,18137375-18137440,18137592-181378...    27   8.8  

>01_01_0585 -
           4328725-4329030,4329333-4329551,4329752-4329820,
           4329925-4331469,4332220-4332429,4332563-4332713,
           4332791-4333031,4333898-4333956,4334379-4334653,
           4334813-4334955,4335034-4335088,4335181-4335258,
           4335351-4335478,4335533-4335575
          Length = 1173

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 14/51 (27%), Positives = 26/51 (50%)
 Frame = +3

Query: 402 CLHEVLVMRNGDINQHCSTRRSIYYHNIRFIGNNIPIRDNRSVPVERNMTI 554
           CL+ +  ++    +   STR S  YH I   G  +    N++ P+E ++T+
Sbjct: 792 CLNALSALKQCKWDAEISTRASSLYHLIDLHGKTVTSIVNKAEPLEAHLTL 842


>11_04_0288 - 15802010-15803506
          Length = 498

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 18/70 (25%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
 Frame = -2

Query: 392 KLIKYLDLAHETTAMWHVDSTIIVPIVVSVHGLIAKSFDQHLK-KLSLSSW----VKGLI 228
           +LI +L   +   A +   +  +  +V+ +H +I ++  +H+    SL  W    +KG+ 
Sbjct: 19  RLIAFLISRYSNRACFEETAIKLELLVLKIHAVIQEAEHRHIAGNQSLLLWLKKLIKGMY 78

Query: 227 QKAVILDTAR 198
           Q   +LD AR
Sbjct: 79  QAYYVLDNAR 88


>01_06_0109 -
           26526691-26526775,26526894-26527019,26527228-26527370,
           26527521-26527555,26527676-26527791,26527868-26527936,
           26528070-26528173,26528253-26528338,26528429-26528530,
           26528609-26528662,26528763-26528840,26528936-26528973,
           26529235-26529344,26529463-26529506,26530232-26530280
          Length = 412

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 8/71 (11%)
 Frame = -2

Query: 308 SVHGLIAKSFDQHLKK--------LSLSSWVKGLIQKAVILDTARIVRRFLTLES*PLVA 153
           + HG + + F  H K          S+ +W +GL  +A + D AR++   L LE+    A
Sbjct: 307 AAHGTVTRHFRVHQKGGETSTNSIASIFAWTRGLAHRAKLDDNARLLDFALKLEA----A 362

Query: 152 CVVDTAISGNL 120
           C V T  SG +
Sbjct: 363 C-VGTVESGKM 372


>01_05_0103 -
           18137176-18137283,18137375-18137440,18137592-18137828,
           18137914-18138159,18138483-18138686,18138781-18138852
          Length = 310

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 14/27 (51%), Positives = 19/27 (70%), Gaps = 2/27 (7%)
 Frame = -2

Query: 305 VHGLIAKSF--DQHLKKLSLSSWVKGL 231
           VHG + K +  DQ + K+SLS+ VKGL
Sbjct: 262 VHGKLGKVYIPDQQIAKMSLSNDVKGL 288


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,996,554
Number of Sequences: 37544
Number of extensions: 307779
Number of successful extensions: 710
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 698
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 710
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)