Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1708
         (609 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z36238-5|CAA85277.1|  381|Caenorhabditis elegans Hypothetical pr...    33   0.12 
AF024492-8|AAF98620.1|  336|Caenorhabditis elegans Serpentine re...    30   1.5  
Z68161-7|CAD36488.1| 1130|Caenorhabditis elegans Hypothetical pr...    28   4.5  
Z68161-6|CAA92295.2|  782|Caenorhabditis elegans Hypothetical pr...    28   4.5  
U32305-20|AAK18863.1|  796|Caenorhabditis elegans Worm armadillo...    28   4.5  
AF013951-1|AAC47748.1|  796|Caenorhabditis elegans wrm-1 protein.      28   4.5  
AB017106-1|BAA88837.1|  607|Caenorhabditis elegans Kinesin like ...    28   4.5  
U00036-8|AAL06052.1|  318|Caenorhabditis elegans Hypothetical pr...    28   6.0  
U00036-7|AAK29858.2|  319|Caenorhabditis elegans Hypothetical pr...    28   6.0  
U00036-6|AAK29853.1|  377|Caenorhabditis elegans Hypothetical pr...    28   6.0  
U00036-5|AAT92064.1|  446|Caenorhabditis elegans Hypothetical pr...    28   6.0  

>Z36238-5|CAA85277.1|  381|Caenorhabditis elegans Hypothetical
           protein R74.6 protein.
          Length = 381

 Score = 33.5 bits (73), Expect = 0.12
 Identities = 16/59 (27%), Positives = 31/59 (52%)
 Frame = -2

Query: 443 VDVTIPHDENLVKAEKDKLIKYLDLAHETTAMWHVDSTIIVPIVVSVHGLIAKSFDQHL 267
           +D+TIP       ++ +K ++    A  T  M HV+  ++  ++V+  G +  +F QHL
Sbjct: 163 IDMTIPRKRKGFTSQHEKGLEKFYEAVSTAFMRHVNLQVVKCVIVASRGFVKDAFMQHL 221


>AF024492-8|AAF98620.1|  336|Caenorhabditis elegans Serpentine
           receptor, class h protein130 protein.
          Length = 336

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = -2

Query: 329 IIVPIVVSVHGLIAKSFDQHLKKLSLSSWV-KGLIQKAVILDTARIVRR 186
           +IVPIV  V       FDQ L  +SL+     GLI  AV+L   +  R+
Sbjct: 254 VIVPIVYIVFAFANSHFDQILNNISLNIMAFHGLISSAVMLTIHKPYRK 302


>Z68161-7|CAD36488.1| 1130|Caenorhabditis elegans Hypothetical
           protein F20C5.2b protein.
          Length = 1130

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = -2

Query: 461 ARRAVLVD--VTIPHDENLVKAEKDKLIKYLDLAHETTAMWHVDSTIIVPIVVSV 303
           A RA L D    I  D++L+K EKD+LI+ +   H+      ++   +   + ++
Sbjct: 376 AERAKLEDDIEAIQKDDSLIKHEKDRLIREIQEKHDLLEKERIEQARVAERIANI 430


>Z68161-6|CAA92295.2|  782|Caenorhabditis elegans Hypothetical
           protein F20C5.2a protein.
          Length = 782

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = -2

Query: 461 ARRAVLVD--VTIPHDENLVKAEKDKLIKYLDLAHETTAMWHVDSTIIVPIVVSV 303
           A RA L D    I  D++L+K EKD+LI+ +   H+      ++   +   + ++
Sbjct: 390 AERAKLEDDIEAIQKDDSLIKHEKDRLIREIQEKHDLLEKERIEQARVAERIANI 444


>U32305-20|AAK18863.1|  796|Caenorhabditis elegans Worm armadillo
           protein 1 protein.
          Length = 796

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 15/61 (24%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = +3

Query: 408 HEVLVMRN-GDINQHCSTRRSIYYHNIRFIGNNIPIRDNRSVPVERNMTIIKNWLRLVLV 584
           HE +V R+ G +   CS     ++H+++ +  N  +   + +  E +  I++ WL  +L 
Sbjct: 664 HEDIVKRSVGLLTNLCSQANPRFFHSLKLVLTNGTLNPFQWLTHEMSDGILQEWLAFILS 723

Query: 585 I 587
           I
Sbjct: 724 I 724


>AF013951-1|AAC47748.1|  796|Caenorhabditis elegans wrm-1 protein.
          Length = 796

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 15/61 (24%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = +3

Query: 408 HEVLVMRN-GDINQHCSTRRSIYYHNIRFIGNNIPIRDNRSVPVERNMTIIKNWLRLVLV 584
           HE +V R+ G +   CS     ++H+++ +  N  +   + +  E +  I++ WL  +L 
Sbjct: 664 HEDIVKRSVGLLTNLCSQANPRFFHSLKLVLTNGTLNPFQWLTHEMSDGILQEWLAFILS 723

Query: 585 I 587
           I
Sbjct: 724 I 724


>AB017106-1|BAA88837.1|  607|Caenorhabditis elegans Kinesin like
           protein (klp-11) protein.
          Length = 607

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = -2

Query: 461 ARRAVLVD--VTIPHDENLVKAEKDKLIKYLDLAHETTAMWHVDSTIIVPIVVSV 303
           A RA L D    I  D++L+K EKD+LI+ +   H+      ++   +   + ++
Sbjct: 339 AERAKLEDDIEAIQKDDSLIKHEKDRLIREIQEKHDLLEKERIEQARVAERIANI 393


>U00036-8|AAL06052.1|  318|Caenorhabditis elegans Hypothetical
           protein R151.2c protein.
          Length = 318

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -2

Query: 488 PDIVIIDRSARRAVLVDVTIPHDENLVKAEKDKLI 384
           P +  ++ S   AV+V  TIP DEN+ K  K + I
Sbjct: 255 PALTRLNASKFEAVVVTNTIPQDENMKKCSKIQCI 289


>U00036-7|AAK29858.2|  319|Caenorhabditis elegans Hypothetical
           protein R151.2b protein.
          Length = 319

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -2

Query: 488 PDIVIIDRSARRAVLVDVTIPHDENLVKAEKDKLI 384
           P +  ++ S   AV+V  TIP DEN+ K  K + I
Sbjct: 256 PALTRLNASKFEAVVVTNTIPQDENMKKCSKIQCI 290


>U00036-6|AAK29853.1|  377|Caenorhabditis elegans Hypothetical
           protein R151.2a protein.
          Length = 377

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -2

Query: 488 PDIVIIDRSARRAVLVDVTIPHDENLVKAEKDKLI 384
           P +  ++ S   AV+V  TIP DEN+ K  K + I
Sbjct: 314 PALTRLNASKFEAVVVTNTIPQDENMKKCSKIQCI 348


>U00036-5|AAT92064.1|  446|Caenorhabditis elegans Hypothetical
           protein R151.2d protein.
          Length = 446

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -2

Query: 488 PDIVIIDRSARRAVLVDVTIPHDENLVKAEKDKLI 384
           P +  ++ S   AV+V  TIP DEN+ K  K + I
Sbjct: 383 PALTRLNASKFEAVVVTNTIPQDENMKKCSKIQCI 417


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,810,166
Number of Sequences: 27780
Number of extensions: 271259
Number of successful extensions: 606
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 593
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 606
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1311096392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)