Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1708
         (609 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    23   3.1  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    21   7.1  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    21   7.1  
DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein ...    21   9.4  

>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = +1

Query: 334 ESTCHMAVVSWARSKYFINLSFSAFTRFSS 423
           E TC M   SW    Y ++L   A T  S+
Sbjct: 156 EQTCFMKFGSWTYDGYTVDLRHLAQTEDSN 185


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 6/21 (28%), Positives = 12/21 (57%)
 Frame = +2

Query: 329 WLNQHATWRWSRGPGLNILLI 391
           W + H +W+ S   G+N + +
Sbjct: 99  WTDSHLSWKPSDFDGINYIYV 119


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +3

Query: 489 FIGNNIPIRDNRSVPVERNMTIIKN 563
           F+G+N P++D   + +   M  I N
Sbjct: 364 FVGSNKPVKDEYMLVLSNRMQKIVN 388


>DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein 5
           protein.
          Length = 104

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -2

Query: 590 PYYQYQPQPVLDNGH 546
           PY Q Q   +LD GH
Sbjct: 31  PYVQKQLHCILDRGH 45


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,256
Number of Sequences: 438
Number of extensions: 3985
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17971191
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)