Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1706
         (700 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A4FWI4 Cluster: Putative uncharacterized protein; n=1; ...    38   0.24 
UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx mori|...    36   0.72 
UniRef50_Q8TRJ3 Cluster: Putative uncharacterized protein; n=1; ...    35   2.2  

>UniRef50_A4FWI4 Cluster: Putative uncharacterized protein; n=1;
           Methanococcus maripaludis|Rep: Putative uncharacterized
           protein - Methanococcus maripaludis
          Length = 441

 Score = 37.9 bits (84), Expect = 0.24
 Identities = 23/62 (37%), Positives = 37/62 (59%)
 Frame = +3

Query: 147 SVLDLLVDTLKIEFSEKNSIDIYLIVNK*IVRNIESIRRRNVCPALIAKIKKIENKCVIH 326
           ++LDL + +LK EF +    ++Y+ +N      IE I+ RN C A I K +KI  K +I+
Sbjct: 98  NILDLKIKSLKSEFKQYTLYEMYIPLNLKTEFTIEKIKCRNFC-AEIVKYRKI--KGIIN 154

Query: 327 EP 332
           +P
Sbjct: 155 QP 156


>UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx
           mori|Rep: NADPH oxidoreductase - Bombyx mori (Silk moth)
          Length = 191

 Score = 36.3 bits (80), Expect = 0.72
 Identities = 14/15 (93%), Positives = 15/15 (100%)
 Frame = -1

Query: 577 DELTAHLVLSGYWNP 533
           DELTAHLVLSGYW+P
Sbjct: 161 DELTAHLVLSGYWSP 175


>UniRef50_Q8TRJ3 Cluster: Putative uncharacterized protein; n=1;
           Methanosarcina acetivorans|Rep: Putative uncharacterized
           protein - Methanosarcina acetivorans
          Length = 320

 Score = 34.7 bits (76), Expect = 2.2
 Identities = 19/40 (47%), Positives = 26/40 (65%)
 Frame = -1

Query: 346 IIWLHGS*ITHLFSIFFILAIRAGQTFLRLIDSMFRTIYL 227
           IIWL  S  T L +IF I+ + AG+ FLR  D++F T+ L
Sbjct: 148 IIWLVVS-FTVLLAIFLIVLLYAGEIFLRFTDAVFITLKL 186


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 579,664,553
Number of Sequences: 1657284
Number of extensions: 10734601
Number of successful extensions: 21735
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 21178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21733
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 55371905986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)