Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1706
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22E12.08 |rrn10||RNA polymerase I upstream activation factor...    28   1.5  
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po...    27   3.4  
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch...    26   4.5  
SPAC31A2.08 |mrp20||mitochondrial ribosomal protein subunit L23|...    26   6.0  
SPAC607.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   6.0  
SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1 |S...    25   7.9  

>SPAC22E12.08 |rrn10||RNA polymerase I upstream activation factor
           complex subunit Rrn10|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 97

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -3

Query: 401 STSKKSFDLKHHTMLLNLDYLVTRLMN 321
           +T KKSF+    + LL L YLVT  M+
Sbjct: 58  ATGKKSFECLDESALLGLGYLVTEWMD 84


>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1057

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +3

Query: 390 FTGARTSCVSARVGTTAPPISRAAVVTILETLELI 494
           +  A   C+  R+  T P ISRAA+  +L    ++
Sbjct: 176 YMAALIPCIKERMHDTKPEISRAAITCMLNLCSVV 210


>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1374

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -2

Query: 255 LTRCFVQFIYLQLNKYRLSFFH*ILF 178
           +TRCFV  +Y   N+     FH ++F
Sbjct: 662 ITRCFVSLLYTDANEGDNHIFHPLVF 687


>SPAC31A2.08 |mrp20||mitochondrial ribosomal protein subunit
           L23|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 161

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -2

Query: 207 RLSFFH*ILFSTCQLINLTPKF 142
           RL +F  I F+ C+ +NL PKF
Sbjct: 8   RLVYFPNITFTLCRGLNLQPKF 29


>SPAC607.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 143

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +3

Query: 213 YLIVNK*IVRNIESIRRRNVCPALIAKIKKIENKCVIHEP 332
           +L V   ++R I SIRRRN+  A ++ +K  +    +  P
Sbjct: 17  FLFVAYGVLRLINSIRRRNMMTADVSSVKSSQTWNFLKNP 56


>SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
 Frame = -3

Query: 506 HTLRYKF*GLKYSYNGCPRNRRGG-GTYPRGNTRGPSTSKKSFDLKHH 366
           H+LR    G  YS +  PR RR   G Y  G T G  +  K   + HH
Sbjct: 98  HSLRVPVSGHSYSADEKPRERRKVIGNYVLGKTIGAGSMGK-VKVAHH 144


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,472,073
Number of Sequences: 5004
Number of extensions: 47967
Number of successful extensions: 92
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)