Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1706
         (700 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC084158-29|AAL27264.2|  666|Caenorhabditis elegans Yeast smf (d...    30   1.8  
U00063-3|AAK18959.2|  446|Caenorhabditis elegans Hypothetical pr...    29   3.2  
Z35602-2|CAA84671.3|  824|Caenorhabditis elegans Hypothetical pr...    28   7.4  
U41277-5|AAA82476.2|  230|Caenorhabditis elegans Hypothetical pr...    28   7.4  

>AC084158-29|AAL27264.2|  666|Caenorhabditis elegans Yeast smf
           (divalent cation transporter)homolog protein 3 protein.
          Length = 666

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -3

Query: 605 FLFFYCLDV*RAHSPLGVKWLLEPIDIYNVNAP 507
           +L +YCL      SP+  KWL EPI  ++ +AP
Sbjct: 612 YLTYYCLVAMEFISPIQTKWLAEPI-YHDFDAP 643


>U00063-3|AAK18959.2|  446|Caenorhabditis elegans Hypothetical
           protein F56C9.3 protein.
          Length = 446

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = +3

Query: 432 TTAPPISRAAVVTIL--ETLELISQGVWRIYVVDVYGFQ*PLNTKW 563
           T   P+S   +  I+   +++LI   V RI+   VYG + P+N  W
Sbjct: 200 TRVEPLSLILISVIMGMASVQLIISSVRRIHDAAVYGIKDPINVSW 245


>Z35602-2|CAA84671.3|  824|Caenorhabditis elegans Hypothetical
           protein R13G10.2 protein.
          Length = 824

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +2

Query: 173 VENRIQ*KKLNRYLFNCK*INCTKHRVNKTEKCLPS 280
           ++N +  ++    L NCK      HR++KTE C PS
Sbjct: 53  IKNMLMEEECVLQLGNCKKTASYGHRLSKTEACCPS 88


>U41277-5|AAA82476.2|  230|Caenorhabditis elegans Hypothetical
           protein C06E4.7 protein.
          Length = 230

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +2

Query: 494 ISRCVAHLRCRCL-WVPVTT*HQVGCELVTHLGNKKIKKQFKIL 622
           I+  VA  +C C  W   +T   +GCELV  L N   + +F+ L
Sbjct: 26  INLSVAERQCICASWEKASTQSDIGCELVARLLNDN-RTRFRAL 68


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,736,617
Number of Sequences: 27780
Number of extensions: 272867
Number of successful extensions: 545
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 537
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 545
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)