Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1706
         (700 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    26   0.40 
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    26   0.40 
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    23   2.8  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    23   2.8  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   4.9  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    21   8.5  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   8.5  

>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 25.8 bits (54), Expect = 0.40
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +3

Query: 105 PAVCHARRIFVIQISVLDLLVDTLKIE 185
           P  CHAR I  + + ++DL  D ++I+
Sbjct: 478 PCRCHARCIARLALDMMDLAADEVQID 504


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 25.8 bits (54), Expect = 0.40
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +3

Query: 105 PAVCHARRIFVIQISVLDLLVDTLKIE 185
           P  CHAR I  + + ++DL  D ++I+
Sbjct: 478 PCRCHARCIARLALDMMDLAADEVQID 504


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = -2

Query: 138 LQIYVWHGTQQETTLPN 88
           L I  WHG    T LPN
Sbjct: 81  LPIEPWHGVLNATVLPN 97


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = -2

Query: 138 LQIYVWHGTQQETTLPN 88
           L I  WHG    T LPN
Sbjct: 81  LPIEPWHGVLNATVLPN 97


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +3

Query: 132 FVIQISVLDLLVDTLKIEFSEKNSIDIYLIVN 227
           F++ ++V DLLV  L + F+      +Y++VN
Sbjct: 224 FIVSLAVADLLVAVLVMPFA------VYVLVN 249


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -2

Query: 270 HFSVLLTRCFVQFIYLQL 217
           H  V+  RC  +++Y QL
Sbjct: 318 HAEVVARRCLCEYLYKQL 335


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -2

Query: 372 APHDAFKFGLFGYTA 328
           APH AF + + GY +
Sbjct: 608 APHKAFTYRMHGYAS 622


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,977
Number of Sequences: 438
Number of extensions: 3420
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)