Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1705
         (673 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    27   2.5  
SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr 1|...    26   5.7  
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ...    25   7.5  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    25   7.5  
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha...    25   9.9  

>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 22/72 (30%), Positives = 33/72 (45%)
 Frame = -1

Query: 670  TPERIILSVSRRSLP*LFRLNRHSATYPLRAMILDATTSLPSITAAAAGPSTCSCPRALK 491
            +P  +  SV+ +  P   RL   SAT P        +T+LPS +A +  P   S  R+  
Sbjct: 1042 SPSALSPSVTPQLPPVSSRLPPVSATRPQIPQPPPVSTALPSSSAVSRPPIATSAGRS-S 1100

Query: 490  PACPSNCSLCYP 455
             A  ++  L YP
Sbjct: 1101 TAASTSAPLTYP 1112


>SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 623

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = -3

Query: 377 KDKKYPDRRAMGFPFDRPSSSATSLQDFILPNMGLQDITIQLQNVTEPN 231
           K K+  + RAM   F +PS    S + FI     L    ++ + VT+P+
Sbjct: 203 KKKRDKETRAMA-SFSKPSDYLMSYESFIEDEYPLHPTVMKGEEVTQPS 250


>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 582

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -1

Query: 562 TTSLPSITAAAAGPSTCSCPRALKPACPS 476
           T S   ++ A++ PS CSCP ++K + PS
Sbjct: 301 TVSSGPLSTASSIPSNCSCP-SVKSSGPS 328


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +2

Query: 284  LVE*SPGGWWRCLKVGRTG 340
            +V+  P GWW  LK G  G
Sbjct: 1135 IVQKEPSGWWLALKNGAEG 1153


>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 578

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 11/45 (24%), Positives = 19/45 (42%)
 Frame = -3

Query: 653 IVRQSTESSITIPFEQTFRDLSAQGNDPRRNDLTTFNYCGCGWPQ 519
           +V    +  +   FEQ  R++ +   DP RN      +    WP+
Sbjct: 313 LVLDEADRMLDTGFEQDIRNIISHTPDPTRNGSRQTVFFSATWPE 357


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,809,863
Number of Sequences: 5004
Number of extensions: 58064
Number of successful extensions: 130
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)