Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1705
         (673 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0227 - 1718726-1721183,1721804-1721957,1722090-1722165,172...    29   2.6  
10_06_0145 + 11215895-11216860                                         29   2.6  
08_01_0897 - 8839134-8839718                                           29   4.5  
02_05_0929 - 32798477-32798679,32798833-32798917                       28   5.9  
07_01_0214 + 1595917-1596526,1597127-1597140,1598414-1598743,159...    28   7.8  

>12_01_0227 -
           1718726-1721183,1721804-1721957,1722090-1722165,
           1722327-1722485,1722552-1722662,1722791-1722841,
           1722948-1723192,1723745-1725278
          Length = 1595

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -1

Query: 559 TSLPSITAAAAGPSTCSCPRALKPACPSNCSLCYP 455
           T  PSI AAA GP        L+P  P+  ++ YP
Sbjct: 517 TVRPSIQAAAPGPRWLRLAATLRPISPATAAVRYP 551


>10_06_0145 + 11215895-11216860
          Length = 321

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 8/68 (11%)
 Frame = -1

Query: 643 SRRSLP*LFRLNRHSA---TYPLRAMILDATTSLPSITAAAAGPSTCS-----CPRALKP 488
           +R + P L R  RH A   +  + A IL ATT+  + TAAAA P++ +      PR +K 
Sbjct: 175 ARLNFPELRRGGRHHAPALSASVDAKILQATTTTTADTAAAAAPASTNTTPPPSPRVVKT 234

Query: 487 ACPSNCSL 464
             P  CS+
Sbjct: 235 E-PGCCSV 241


>08_01_0897 - 8839134-8839718
          Length = 194

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -1

Query: 538 AAAAGPSTCSCPRALKPACPSNCSLCYPT 452
           A AAG S    P +L+P  PS  S+ +PT
Sbjct: 158 AVAAGGSPAPAPSSLRPRRPSGMSIKWPT 186


>02_05_0929 - 32798477-32798679,32798833-32798917
          Length = 95

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = -1

Query: 604 HSATYPLRAMILDATTSLPSITAAAAGPS--TCSCPRALKPACPS 476
           H+A   L AM+L A++S   + A  AGP     +C   L P  PS
Sbjct: 11  HAALLLLLAMVLVASSSSGVMAAKIAGPKYFQDTCSAVLNPGAPS 55


>07_01_0214 +
           1595917-1596526,1597127-1597140,1598414-1598743,
           1598853-1598963,1599113-1599269,1603366-1603619,
           1603762-1603960,1604341-1604498
          Length = 610

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 13/31 (41%), Positives = 21/31 (67%)
 Frame = +1

Query: 487 PASVPLGTSMCWGQPQPQ*LKVVRSLRRGSL 579
           P+S+PL +S  +GQP P   ++ R +R+ SL
Sbjct: 96  PSSLPLPSSTRFGQPDPLAGRLGRQIRKPSL 126


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,607,895
Number of Sequences: 37544
Number of extensions: 400807
Number of successful extensions: 1105
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1077
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1103
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)