Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1704
(700 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL032626-9|CAA21529.1| 180|Caenorhabditis elegans Hypothetical ... 121 4e-28
Z81593-1|CAB04738.1| 608|Caenorhabditis elegans Hypothetical pr... 31 1.0
U27312-13|AAA68256.1| 162|Caenorhabditis elegans Hypothetical p... 30 1.8
AF036693-11|AAK29788.1| 392|Caenorhabditis elegans Hypothetical... 28 7.4
Z50794-6|CAA90659.2| 388|Caenorhabditis elegans Hypothetical pr... 27 9.8
L19639-1|AAC37168.1| 253|Caenorhabditis elegans homeobox protei... 27 9.8
L19248-1|AAB04137.1| 253|Caenorhabditis elegans homeobox protei... 27 9.8
AC006605-9|AAK85445.1| 253|Caenorhabditis elegans Abnormal cell... 27 9.8
>AL032626-9|CAA21529.1| 180|Caenorhabditis elegans Hypothetical
protein Y37D8A.10 protein.
Length = 180
Score = 121 bits (292), Expect = 4e-28
Identities = 63/175 (36%), Positives = 93/175 (53%), Gaps = 1/175 (0%)
Frame = +1
Query: 118 TAEAAKI-NKWDGAAAKNAVDDAIREVMTGDLKCKESFALIDGRLFXXXXXXXXXXXXXX 294
T E K+ NKWDG KNA+D+ +++++ + ES L++ RL
Sbjct: 2 TDEPVKVVNKWDGPTVKNALDEVVKKILNDKVGWTESHNLMNLRLLISFIGVAFSAFACG 61
Query: 295 WDYLYPFPQSRLVLIICVSSYFILMGILTLYTTLKEKGIFVVAKEKVGNNTRVWEASSYV 474
+DY PFP+S++VL +C SYFI MGIL +Y EK A E G +R W SS +
Sbjct: 62 YDYYEPFPKSKIVLAVCSVSYFICMGILQMYQWYVEKDCIYEATEVDGKQSRKWAWSSEI 121
Query: 475 KKHDDKYNLVIVMRDTNGNTREASVTKSFANFIDVNGTVVQNIVSNEITKLYHSL 639
K HDDKY L + G + + +TKS +ID +G ++ +V E+ LY+ L
Sbjct: 122 KAHDDKYTLSAEFK-KEGRSGQGKITKSIGAYIDNDGEIIVPLVKKEVDDLYNRL 175
>Z81593-1|CAB04738.1| 608|Caenorhabditis elegans Hypothetical
protein T20B3.1 protein.
Length = 608
Score = 30.7 bits (66), Expect = 1.0
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = -1
Query: 538 HECCHSCLA*QLRDCIYRRVSLHKNWLPRPW 446
HE HS L QL+ + R HKNWL W
Sbjct: 46 HEFQHSELGAQLQSALENRAKNHKNWLEDWW 76
>U27312-13|AAA68256.1| 162|Caenorhabditis elegans Hypothetical
protein F26A1.14 protein.
Length = 162
Score = 29.9 bits (64), Expect = 1.8
Identities = 21/80 (26%), Positives = 40/80 (50%)
Frame = +1
Query: 457 EASSYVKKHDDKYNLVIVMRDTNGNTREASVTKSFANFIDVNGTVVQNIVSNEITKLYHS 636
E S K + + +I++R G+ + +++ + N + NG +V+N VSN IT+
Sbjct: 15 EISDIQKCLVEGHRTIILIRGVTGSGK-STLARELVNHSE-NGVIVKNDVSNNITRSVRK 72
Query: 637 LSSEKKEK*LILSICNLSRS 696
E K +++ N+ RS
Sbjct: 73 FIDEDKHL-IVVDEENVQRS 91
>AF036693-11|AAK29788.1| 392|Caenorhabditis elegans Hypothetical
protein C49A9.1 protein.
Length = 392
Score = 27.9 bits (59), Expect = 7.4
Identities = 18/63 (28%), Positives = 28/63 (44%)
Frame = +1
Query: 400 EKGIFVVAKEKVGNNTRVWEASSYVKKHDDKYNLVIVMRDTNGNTREASVTKSFANFIDV 579
E G F K +N + WE Y K + N +V+ + NGN + +T + N+
Sbjct: 280 ELGYFFEGIFKQKSNGK-WECEQYNNKIEPLINGTVVINEYNGN-EKVELTTTVTNYKPK 337
Query: 580 NGT 588
N T
Sbjct: 338 NNT 340
>Z50794-6|CAA90659.2| 388|Caenorhabditis elegans Hypothetical
protein F59F5.5 protein.
Length = 388
Score = 27.5 bits (58), Expect = 9.8
Identities = 22/58 (37%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Frame = -1
Query: 658 FPSSRMRGCGTAW*SH*IQCF--ELQCRSRR*SWQTTWSRMPHE-CCHSCLA*QLRDC 494
FPS + RGC A I CF + QC +R SR+P CCH C + DC
Sbjct: 66 FPSGQ-RGCQYASNMDTIHCFCDQDQCNTRHKLGSYIPSRLPSVECCH-CTSRHGEDC 121
>L19639-1|AAC37168.1| 253|Caenorhabditis elegans homeobox protein
protein.
Length = 253
Score = 27.5 bits (58), Expect = 9.8
Identities = 19/64 (29%), Positives = 26/64 (40%)
Frame = +3
Query: 360 HTDGYFDPLHYIKREGHLCGSQGEGWK*HQGLGSQFLCKETRR*IQSRNCYARHEWQHS* 539
H Y+DP + + SQG G + LG Q LC + S H+W+H
Sbjct: 66 HFGSYYDPTSSSQIASYFASSQGLGGPQYPILGDQSLCYNPS--VTS----THHDWKHLE 119
Query: 540 GIRD 551
G D
Sbjct: 120 GDDD 123
>L19248-1|AAB04137.1| 253|Caenorhabditis elegans homeobox protein
protein.
Length = 253
Score = 27.5 bits (58), Expect = 9.8
Identities = 19/64 (29%), Positives = 26/64 (40%)
Frame = +3
Query: 360 HTDGYFDPLHYIKREGHLCGSQGEGWK*HQGLGSQFLCKETRR*IQSRNCYARHEWQHS* 539
H Y+DP + + SQG G + LG Q LC + S H+W+H
Sbjct: 66 HFGSYYDPTSSSQIASYFASSQGLGGPQYPILGDQSLCYNPS--VTS----THHDWKHLE 119
Query: 540 GIRD 551
G D
Sbjct: 120 GDDD 123
>AC006605-9|AAK85445.1| 253|Caenorhabditis elegans Abnormal cell
lineage protein 39 protein.
Length = 253
Score = 27.5 bits (58), Expect = 9.8
Identities = 19/64 (29%), Positives = 26/64 (40%)
Frame = +3
Query: 360 HTDGYFDPLHYIKREGHLCGSQGEGWK*HQGLGSQFLCKETRR*IQSRNCYARHEWQHS* 539
H Y+DP + + SQG G + LG Q LC + S H+W+H
Sbjct: 66 HFGSYYDPTSSSQIASYFASSQGLGGPQYPILGDQSLCYNPS--VTS----THHDWKHLE 119
Query: 540 GIRD 551
G D
Sbjct: 120 GDDD 123
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,227,936
Number of Sequences: 27780
Number of extensions: 313159
Number of successful extensions: 805
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 774
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 804
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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