Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1703
         (697 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14F5.11c |mug186||sorting nexin Snx41|Schizosaccharomyces po...    29   0.64 
SPAC29B12.06c |rcd1||RNA-binding protein Rcd1 |Schizosaccharomyc...    26   4.5  
SPAC23C11.16 |plo1||Polo kinase Plo1|Schizosaccharomyces pombe|c...    26   4.5  
SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|c...    26   5.9  
SPBC32H8.08c |||mannosyltransferase complex subunit |Schizosacch...    26   5.9  
SPAC20G8.04c |||mitochondrial electron transfer flavoprotein-ubi...    25   7.8  

>SPBC14F5.11c |mug186||sorting nexin Snx41|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 586

 Score = 29.1 bits (62), Expect = 0.64
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = +3

Query: 204 IRDAFDEVRGKMDKINSENCYISHLDDLYLSEDSVSHHPDVKEININPV 350
           IRD FD +R  ++ +   N  +S  +++  + +SV+H  D+  I    V
Sbjct: 482 IRDVFDRIRFVLNGLTDNNVEVSRHNNIGRTAESVTHLTDMLLITTKDV 530


>SPAC29B12.06c |rcd1||RNA-binding protein Rcd1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 283

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = +2

Query: 299 RLCFSPSRRERDQHQPGIPKPYRDAAFAQ 385
           RL  +P  RE  +H   +P+P RDA FAQ
Sbjct: 230 RLSDNPRAREALRHC--LPEPLRDATFAQ 256


>SPAC23C11.16 |plo1||Polo kinase Plo1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 683

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -1

Query: 241 SIFPRTSSKASRICHSY*PATPHNNAQS 158
           +I P+  SKASR+C +  P   HNN ++
Sbjct: 12  AITPKKKSKASRLCFTP-PTNLHNNKKN 38


>SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 807

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 17/60 (28%), Positives = 29/60 (48%)
 Frame = -2

Query: 222 RQKHRVFAIRTDRPHPTTMHKAILLTNCSLFSPFSLKLYASFAEL*IQCNNKHILIHKRF 43
           R+  + F  R   PHPT+++  I +  C    P  L +  SF  L ++ +N+  L+   F
Sbjct: 428 RKCPKKFVARPPVPHPTSLYSQIRI-GCPYLKP-KLVISKSFGTLIVKNHNQLSLLKCTF 485


>SPBC32H8.08c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 18/66 (27%), Positives = 32/66 (48%)
 Frame = +3

Query: 360 RTAMLHLHNMAMNRAFFWSFVLQTRFIRPAINDTYDPGMMYYFLSAVADVAANPYINASA 539
           + +ML  HN    R  +W ++ +   +RP INDTYD        +   + +  P +NA+ 
Sbjct: 53  KASMLGFHNW---RRTYWLYLKK---LRP-INDTYDAPFAIGCKNVAYEASQYPRMNATF 105

Query: 540 IYFSPN 557
           +  + N
Sbjct: 106 MVLARN 111


>SPAC20G8.04c |||mitochondrial electron transfer
           flavoprotein-ubiquinone
           oxidoreductase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 632

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 17/54 (31%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
 Frame = +3

Query: 444 PAINDTYDPGMMYYFLSAVADVAANPYINASAIYFSPNMSYTSSYRG-FFNKTL 602
           P  NDTY  G MY F      V     ++    Y SP + +    +  FF K L
Sbjct: 318 PMRNDTYGGGFMYQFGDNYVTVGLVVGLDYPNPYVSPALEFQRMKQNPFFAKVL 371


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,941,910
Number of Sequences: 5004
Number of extensions: 63606
Number of successful extensions: 176
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)