Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1703
(697 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0671 + 19358503-19358687,19361294-19361372,19362017-193620... 31 1.2
08_01_0475 - 4185534-4186047,4187437-4187708,4188032-4188979,419... 30 1.5
04_04_1323 + 32644956-32645096,32645488-32646126,32646701-326469... 30 1.5
01_06_1331 + 36373059-36373338,36374190-36374263,36374530-363746... 29 4.7
01_01_0238 - 1976645-1977561,1977649-1977909,1978243-1978275,198... 29 4.7
06_03_1499 + 30593336-30593750,30594352-30595343 28 6.2
01_06_0923 + 33044283-33044433,33044826-33045242,33046209-330465... 28 6.2
08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,322... 28 8.1
>09_04_0671 +
19358503-19358687,19361294-19361372,19362017-19362087,
19362665-19362764,19362836-19362877,19362972-19363013,
19363703-19363801,19364362-19364433
Length = 229
Score = 30.7 bits (66), Expect = 1.2
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = -1
Query: 424 RTKLQKKALFMAILCKCSIA-VRFGNTGLMLISFTSGW*ETESSERYK 284
R L KKA +++LC +A + F N G L F SG T + ERY+
Sbjct: 25 RNGLLKKAYELSVLCDAEVALIIFSNRG-KLYEFCSGQSMTRTLERYQ 71
>08_01_0475 -
4185534-4186047,4187437-4187708,4188032-4188979,
4190096-4190387,4190486-4191357,4192298-4192354,
4192391-4192504,4192966-4193595
Length = 1232
Score = 30.3 bits (65), Expect = 1.5
Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Frame = +3
Query: 207 RDAFDEVRGKMDKINSENCYISH-LDDLYLSEDSVSHHPDVKEININPVFPNRTAMLHLH 383
R F E R +INS N ++SH L ++ S D V+ PD V P R A +
Sbjct: 107 RSFFRETRLVSHQINSYNDFVSHGLQKMFDSLDEVTVEPDYDP--SKKVGPWRHATIKFG 164
Query: 384 NMAMNRAFFW 413
+ + FW
Sbjct: 165 RVELEEPVFW 174
>04_04_1323 +
32644956-32645096,32645488-32646126,32646701-32646907,
32647020-32647100,32647686-32648566,32648641-32648932,
32649657-32650673,32651334-32651605,32651992-32652493
Length = 1343
Score = 30.3 bits (65), Expect = 1.5
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Frame = +3
Query: 207 RDAFDEVRGKMDKINSENCYISH-LDDLYLSEDSVSHHPDVKEININPVFPNRTAMLHLH 383
R FDE+ +INS N ++SH L +L+ S V+ P N P R A++
Sbjct: 156 RSFFDEIGLISHQINSYNEFVSHGLQELFDSLGEVTVEPSYDPSNRGP-GGWRHAIIKFG 214
Query: 384 NMAMNRAFFWS 416
+ + FWS
Sbjct: 215 RVQLEEPVFWS 225
>01_06_1331 +
36373059-36373338,36374190-36374263,36374530-36374699,
36374731-36374822,36375087-36375323,36375922-36375980,
36376462-36376644,36377347-36377437,36377959-36378002,
36378085-36378207
Length = 450
Score = 28.7 bits (61), Expect = 4.7
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = -3
Query: 635 ISSECSGSKTRQGLVKEPSVRRGIRHIWGEIYCTSVYVGIGSHI 504
+S S+T G PS R + +WG Y +G+GS I
Sbjct: 184 VSPRSQVSRTSSGAASGPSESRDLGQVWGWGYGGEGQLGLGSRI 227
>01_01_0238 -
1976645-1977561,1977649-1977909,1978243-1978275,
1980556-1981345
Length = 666
Score = 28.7 bits (61), Expect = 4.7
Identities = 24/85 (28%), Positives = 35/85 (41%), Gaps = 5/85 (5%)
Frame = -3
Query: 623 CSGSKTRQGLVKEPS--VRRGIRHIWGE---IYCTSVYVGIGSHIGNGRKEIIHHTRIVG 459
CS S PS V RGI+ G + C + +G+GS + R++ G
Sbjct: 249 CSNSTRTNTTSSHPSGKVNRGIKIAAGTAAAVVCLGI-LGVGSTVLYTRRKRKRSASFEG 307
Query: 458 IIDGGSNKPGLENEAPEKSSIHGHI 384
+I GG+ P L E + HI
Sbjct: 308 LIHGGTPLPSLTKEFSLAGLAYTHI 332
>06_03_1499 + 30593336-30593750,30594352-30595343
Length = 468
Score = 28.3 bits (60), Expect = 6.2
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = +3
Query: 450 INDTYDPGMMYYFLSAVADVAANPYI 527
+N+T+ + Y+F A +DVA P +
Sbjct: 73 VNETHGRALFYWFFEAASDVATKPLV 98
>01_06_0923 +
33044283-33044433,33044826-33045242,33046209-33046538,
33046806-33046876,33047283-33047357,33047435-33047578,
33047645-33047816,33047933-33048616,33048711-33048767,
33048850-33048956,33049485-33049610,33050221-33050295,
33050387-33050499,33050789-33050905,33051384-33051444,
33051690-33051763,33052267-33052388,33052472-33052620,
33053525-33053635,33053946-33054008,33054689-33054722,
33055253-33055375,33055971-33056033,33056130-33056196,
33056311-33056356,33056446-33056552,33056923-33056971,
33057208-33057273,33057544-33057630
Length = 1286
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/24 (54%), Positives = 19/24 (79%)
Frame = +3
Query: 618 RAFRADDFNDPVHLQKISTMNTFI 689
RA ADDF+ PVH +K+S +N+F+
Sbjct: 585 RAAVADDFHAPVHSRKLS-VNSFV 607
>08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,
3220080-3223195,3223303-3223561,3223665-3223951,
3224029-3224364,3224463-3224604,3224690-3224910,
3224990-3225151,3225242-3225400,3225488-3225787,
3226306-3226569,3227370-3227453
Length = 1855
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = +3
Query: 492 SAVADVAANPYINASAIYFSPNMSYTSSYRGFFNKTLPRFAP 617
S + D +PY+ A P+ YT S G ++ + P ++P
Sbjct: 1519 SPITDAQFSPYVGGMAFSPVPSPGYTPSSGGGYSPSSPVYSP 1560
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,849,897
Number of Sequences: 37544
Number of extensions: 423588
Number of successful extensions: 1115
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1081
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1115
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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