Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1699
         (398 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659249-1|ABG47447.1|  383|Tribolium castaneum chitinase 9 prot...    22   1.9  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    22   1.9  
DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11 pro...    21   3.4  
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    21   4.5  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   5.9  

>DQ659249-1|ABG47447.1|  383|Tribolium castaneum chitinase 9
           protein.
          Length = 383

 Score = 22.2 bits (45), Expect = 1.9
 Identities = 11/47 (23%), Positives = 27/47 (57%)
 Frame = +2

Query: 47  LHNLVTDQQTNSDLKPMNSIGNSDVENNKHVETLDDGQLRALLDEAI 187
           +++L++ ++ N DLK + S+G  +  + K+        LRA + +++
Sbjct: 80  MNHLMSLREKNPDLKIILSMGGWNEGSYKYSTVAKSAALRATMVQSV 126


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 22.2 bits (45), Expect = 1.9
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +3

Query: 336 HPSLIPTHSRTSWPHWPPSP 395
           HP L+P   + + P  PP+P
Sbjct: 58  HPGLLPLAWQANSPPSPPAP 77


>DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11
           protein.
          Length = 366

 Score = 21.4 bits (43), Expect = 3.4
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = +2

Query: 35  DTKVLHNLVTDQQTNSDLKPMNSIGNSDVENNKHVETLDDGQLRALL 175
           D   L N+   +  N DLK + SIG  +  N      +   +LRA L
Sbjct: 79  DLHGLENVANLKSVNPDLKVLISIGGWNAGNAILNGIVASSKLRASL 125


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 21.0 bits (42), Expect = 4.5
 Identities = 5/22 (22%), Positives = 12/22 (54%)
 Frame = +3

Query: 114 RTWRTINMSKPWTTVNFERSSM 179
           R W+T+   +PW  ++  +  +
Sbjct: 526 RPWQTVYNHRPWQQLHLNKKQI 547


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 20.6 bits (41), Expect = 5.9
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +2

Query: 62  TDQQTNSDLKPMNSIG 109
           T + TN D KP  S+G
Sbjct: 945 TPRSTNGDRKPGGSLG 960


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 82,075
Number of Sequences: 336
Number of extensions: 1606
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8541369
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)