Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1699
(398 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23C11.09 |||alanine-tRNA ligase |Schizosaccharomyces pombe|c... 27 1.4
SPBC8D2.05c |sfi1||spindle pole body protein Sfi1|Schizosaccharo... 26 1.9
SPAC3C7.09 |set8||lysine methyltransferase Set8 |Schizosaccharom... 26 1.9
SPBC3H7.14 |mug176||BRCT domain protein|Schizosaccharomyces pomb... 25 4.3
SPCC24B10.21 |tpi1|tpi|triosephosphate isomerase|Schizosaccharom... 25 4.3
SPAC24C9.08 |||vacuolar carboxypeptidase |Schizosaccharomyces po... 25 4.3
SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3 |Schizosa... 25 5.7
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch... 24 7.6
SPCC63.08c |ppk36|atg1|serine/threonine protein kinase Ppk36|Sch... 24 7.6
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce... 24 7.6
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha... 24 10.0
SPAC29A4.20 |||RNA polymerase II elongator complex, histone acet... 24 10.0
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 24 10.0
SPAC3G6.10c |||GARP complex subunit Vps51 |Schizosaccharomyces p... 24 10.0
>SPAC23C11.09 |||alanine-tRNA ligase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 959
Score = 26.6 bits (56), Expect = 1.4
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +2
Query: 5 DKSATCVSSDDTKVLHNLVTDQQTNSDLKP 94
DKS ++SDDTKV H + + L P
Sbjct: 881 DKSIYLLASDDTKVAHACLVSPEAMKKLTP 910
>SPBC8D2.05c |sfi1||spindle pole body protein
Sfi1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 840
Score = 26.2 bits (55), Expect = 1.9
Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +2
Query: 29 SDDTKVLHNLVTDQQTNSDLK-PMNSIGNSDVENNKHVETLDDGQLRA 169
+D+ + L + Q +SDL P+ + N+D+EN+ + DD + R+
Sbjct: 84 NDEWRNLMRRIGFSQVSSDLNTPLFPLNNTDMENDPFIVNGDDYRSRS 131
>SPAC3C7.09 |set8||lysine methyltransferase Set8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 429
Score = 26.2 bits (55), Expect = 1.9
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +3
Query: 135 MSKPWTTVNFERSSMKPSRTNVPKIVRAKAVF 230
+ + W ++N S PS+ +PK V A A+F
Sbjct: 144 LQQEWLSLNQRYSDSWPSKITLPKWVHADALF 175
>SPBC3H7.14 |mug176||BRCT domain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 406
Score = 25.0 bits (52), Expect = 4.3
Identities = 15/61 (24%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = +2
Query: 50 HNLVTDQQTNSDLKPMNSIGNS-DVENNKHVETLDDGQLRALLDEAITYKCPKDREGKSS 226
H++ +D+ ++ K +N+ S +EN+ ET D +++ L PK E S
Sbjct: 28 HSIPSDELNSNSSKSLNNDRISRTIENSLQKETNSDNKIKKLSKTKSNPTNPKSEEDPSQ 87
Query: 227 L 229
+
Sbjct: 88 I 88
>SPCC24B10.21 |tpi1|tpi|triosephosphate
isomerase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 249
Score = 25.0 bits (52), Expect = 4.3
Identities = 16/64 (25%), Positives = 31/64 (48%)
Frame = +2
Query: 47 LHNLVTDQQTNSDLKPMNSIGNSDVENNKHVETLDDGQLRALLDEAITYKCPKDREGKSS 226
++ + T QQ D+ +G +V + K+ + ++L+D ITY E + +
Sbjct: 46 MYLITTRQQVKKDI----GVGAQNVFDKKNGAYTGENSAQSLIDAGITYTLTGHSE-RRT 100
Query: 227 LFKE 238
+FKE
Sbjct: 101 IFKE 104
>SPAC24C9.08 |||vacuolar carboxypeptidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 596
Score = 25.0 bits (52), Expect = 4.3
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +2
Query: 56 LVTDQQTNSDLKPMNSIGNSDV 121
L+T + +N DLKP+ +G+ DV
Sbjct: 179 LITLEGSNKDLKPLVLMGHQDV 200
>SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1029
Score = 24.6 bits (51), Expect = 5.7
Identities = 9/30 (30%), Positives = 15/30 (50%)
Frame = -2
Query: 199 TFVRDGFIEERSKLTVVQGFDMFIVLHVRV 110
T+ D F E R +L ++ F+ H R+
Sbjct: 619 TYKFDNFSESRPRLNILNNCSFFLPFHFRI 648
>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
Mok13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2358
Score = 24.2 bits (50), Expect = 7.6
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = +3
Query: 120 WRTINMSKPWTT-VNFERSSMKPSRTNVPKIVRAKAVFSRNF 242
W+++ + + WT V+F S P+ V IVR +NF
Sbjct: 579 WKSVKL-RNWTEYVHFPNSGKTPTEVGVWSIVRGALETLQNF 619
>SPCC63.08c |ppk36|atg1|serine/threonine protein kinase
Ppk36|Schizosaccharomyces pombe|chr 3|||Manual
Length = 830
Score = 24.2 bits (50), Expect = 7.6
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = +2
Query: 119 VENNKHVETLDDGQLRALLDEAITYKCPKDREGKSSLFKEL 241
V KH ET ++++L + +T K ++ E + S+ KE+
Sbjct: 28 VYKGKHTETNRVISIKSVLTKKLTKKLLENLESEISILKEI 68
>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1210
Score = 24.2 bits (50), Expect = 7.6
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Frame = +2
Query: 107 GNSDVENNKHVETLDDGQLR---ALLDEAITYKCPKDRE 214
G+ + E + TLD + R AL+ + I + CP+D+E
Sbjct: 102 GSEEQEVEQLCSTLDVWRRRIPHALVAKCIVFNCPEDKE 140
>SPBC146.03c |cut3|smc4, smc4|condensin subunit
Cut3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1324
Score = 23.8 bits (49), Expect = 10.0
Identities = 13/54 (24%), Positives = 25/54 (46%)
Frame = +2
Query: 98 NSIGNSDVENNKHVETLDDGQLRALLDEAITYKCPKDREGKSSLFKELLEEVEQ 259
NS+ + D+++ K + D LR +E K +GK+ +EE ++
Sbjct: 468 NSLSSHDIDSQKLNSEIADLSLRLQQEELSLDDIRKSLQGKTEGISNAIEEKQK 521
>SPAC29A4.20 |||RNA polymerase II elongator complex, histone
acetyltransferase subunit |Schizosaccharomyces pombe|chr
1|||Manual
Length = 544
Score = 23.8 bits (49), Expect = 10.0
Identities = 11/41 (26%), Positives = 21/41 (51%)
Frame = +2
Query: 137 VETLDDGQLRALLDEAITYKCPKDREGKSSLFKELLEEVEQ 259
+ET D L LDE + Y C + G S+++++ + +
Sbjct: 217 IETRPDYCLDQHLDEMLRYGCTRLEIGVQSVYEDVARDTNR 257
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 23.8 bits (49), Expect = 10.0
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = +2
Query: 17 TCVSSDDTKVLHNLVTDQQTNSD--LKPMNSIGNSDVENNKH 136
T +++ D K ++VTD TNS+ L+ N+ E+ KH
Sbjct: 1156 TSIANGDIKEPLDVVTDDNTNSNFSLEETNASVTDMPESEKH 1197
>SPAC3G6.10c |||GARP complex subunit Vps51 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 159
Score = 23.8 bits (49), Expect = 10.0
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = -1
Query: 83 LSSFVGQSLDYEELLYHH*IHML 15
++S G S+D+ L+Y+H H+L
Sbjct: 83 VASIQGLSVDHRSLVYNHYKHLL 105
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,434,553
Number of Sequences: 5004
Number of extensions: 26079
Number of successful extensions: 90
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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