Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1699
(398 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0361 - 20648383-20649942 29 1.8
02_05_1333 - 35761405-35761822,35762551-35763155 29 1.8
04_04_1618 + 34822644-34822915,34823008-34823369,34824721-348247... 28 2.4
03_05_0890 - 28547462-28547545,28548451-28548528,28548641-285488... 28 3.1
02_04_0242 + 21210062-21210541 27 4.1
11_04_0250 + 15335457-15335882 27 5.5
06_03_1494 + 30554997-30555608,30555707-30555915,30556006-305561... 27 5.5
01_06_0746 - 31636024-31641396 27 5.5
06_01_0878 + 6735266-6735340,6735946-6736041,6738610-6738720,673... 27 7.2
04_03_0306 + 14136338-14136686,14137408-14137442,14137701-141377... 27 7.2
02_05_1066 + 33852402-33852815,33852936-33853019,33853203-338534... 27 7.2
11_01_0807 - 7178278-7178548,7178629-7178756,7178847-7179815,718... 26 9.5
08_01_1069 + 10916376-10916448,10917331-10918031,10918222-109184... 26 9.5
04_04_1053 - 30431236-30431428,30431794-30431856,30433497-304336... 26 9.5
04_03_0309 - 14186880-14187151,14187428-14188652 26 9.5
03_05_0032 + 20043252-20044361 26 9.5
>05_04_0361 - 20648383-20649942
Length = 519
Score = 28.7 bits (61), Expect = 1.8
Identities = 11/28 (39%), Positives = 21/28 (75%)
Frame = +2
Query: 167 ALLDEAITYKCPKDREGKSSLFKELLEE 250
A++ A++ + ++ EG+S LF+EL+EE
Sbjct: 187 AVICRAVSGRLSREDEGRSELFRELIEE 214
>02_05_1333 - 35761405-35761822,35762551-35763155
Length = 340
Score = 28.7 bits (61), Expect = 1.8
Identities = 15/29 (51%), Positives = 16/29 (55%)
Frame = -1
Query: 344 GGVAAPSPLVLTRVLLPCTAPPPHMLARL 258
GGVA PLVL R CT PPP + L
Sbjct: 36 GGVAGALPLVLRRT-RTCTPPPPMAMTPL 63
>04_04_1618 +
34822644-34822915,34823008-34823369,34824721-34824796,
34824887-34824980,34825086-34825223
Length = 313
Score = 28.3 bits (60), Expect = 2.4
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = -1
Query: 161 VDRRPRFRHVYCSPR 117
VD PRF+HV CSP+
Sbjct: 187 VDASPRFKHVICSPQ 201
>03_05_0890 -
28547462-28547545,28548451-28548528,28548641-28548814,
28548902-28548958,28549065-28549116,28549907-28549995,
28550259-28550344,28550427-28550637,28551790-28551882,
28551958-28552098,28552175-28552267,28553879-28554113,
28554263-28554435,28555234-28556571,28556668-28556853,
28557625-28557713,28557756-28557905,28557951-28558596
Length = 1324
Score = 27.9 bits (59), Expect = 3.1
Identities = 11/21 (52%), Positives = 12/21 (57%), Gaps = 1/21 (4%)
Frame = +3
Query: 336 HPSLIPTHS-RTSWPHWPPSP 395
H SL P H +TSW HW P
Sbjct: 603 HQSLPPKHQHKTSWGHWSDQP 623
>02_04_0242 + 21210062-21210541
Length = 159
Score = 27.5 bits (58), Expect = 4.1
Identities = 14/34 (41%), Positives = 15/34 (44%)
Frame = +1
Query: 247 GSGTRRASM*GGGAVHGRRTRVKTRGEGAATPPS 348
G G A GG RR R RG G +PPS
Sbjct: 19 GGGRGEAGGGGGDGAGPRRRRRARRGRGGGSPPS 52
>11_04_0250 + 15335457-15335882
Length = 141
Score = 27.1 bits (57), Expect = 5.5
Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = +1
Query: 217 QKQSFQGTS*GSGTRRASM*GGGAVHGRRTRVKTR-GEGAAT 339
++QS G + G G RRA GG GR R +R G G AT
Sbjct: 28 RRQSRGGPTAGGGVRRAGGWGGAIWMGRTERWCSRTGTGTAT 69
>06_03_1494 +
30554997-30555608,30555707-30555915,30556006-30556155,
30556254-30556312,30556852-30556961,30557216-30557322,
30557443-30557581,30557705-30557821,30557918-30558025,
30558221-30558292,30558783-30558948,30559044-30559165,
30559245-30559382,30559462-30559604,30559699-30559761,
30560107-30560170,30560238-30560373,30560478-30560551,
30560640-30560734,30560829-30560860,30560973-30561175
Length = 972
Score = 27.1 bits (57), Expect = 5.5
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = +2
Query: 119 VENNKHVETLDDGQLRALLDEAITYKCPKDRE 214
VE ++ + L+ Q+RALL+E T + P DRE
Sbjct: 467 VEGQRYSKRLNQNQIRALLEE--TCQRPHDRE 496
>01_06_0746 - 31636024-31641396
Length = 1790
Score = 27.1 bits (57), Expect = 5.5
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -2
Query: 202 GTFVRDGFIEERSKLTVVQGFDMFIVLHV 116
G + GF+E+RS V + FD V+H+
Sbjct: 301 GRIGKTGFVEQRSFWNVYRSFDRVWVMHI 329
>06_01_0878 +
6735266-6735340,6735946-6736041,6738610-6738720,
6738816-6739309,6739422-6739587,6739666-6739789,
6739874-6739986,6740085-6740693,6743095-6743385,
6743845-6743913,6744099-6744188,6744281-6744696,
6744882-6744969
Length = 913
Score = 26.6 bits (56), Expect = 7.2
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +2
Query: 89 KPMNSIGNSDVENNKHVETLDDGQLRALLD 178
K N+I N ENN + T+D QLR D
Sbjct: 764 KKENNIENHTAENNNNTNTVDSIQLRGSND 793
>04_03_0306 +
14136338-14136686,14137408-14137442,14137701-14137778,
14138046-14138124,14138731-14138823,14139472-14139556,
14140270-14140345,14140669-14140794,14141039-14141137,
14141238-14141339,14141561-14141671,14141809-14141904,
14142488-14142539,14142624-14142735,14142879-14142943,
14144124-14144521,14145236-14145330,14145989-14146015,
14146081-14146156,14146368-14146421,14146741-14146863,
14146955-14147023
Length = 799
Score = 26.6 bits (56), Expect = 7.2
Identities = 12/35 (34%), Positives = 15/35 (42%)
Frame = +1
Query: 247 GSGTRRASM*GGGAVHGRRTRVKTRGEGAATPPSF 351
G +R+ G G G+R RV G PP F
Sbjct: 35 GGSAKRSRGVGAGGSAGKRARVSAAGVAVDLPPGF 69
>02_05_1066 +
33852402-33852815,33852936-33853019,33853203-33853454,
33853643-33853708,33854784-33854849,33854935-33855003,
33855829-33856165,33856438-33856541
Length = 463
Score = 26.6 bits (56), Expect = 7.2
Identities = 15/44 (34%), Positives = 18/44 (40%)
Frame = +1
Query: 214 GQKQSFQGTS*GSGTRRASM*GGGAVHGRRTRVKTRGEGAATPP 345
GQ S S G G + GGG+ + G GAA PP
Sbjct: 165 GQGGSMPAQSFGGGAAASGGGGGGSASAAAAAGASSGGGAAAPP 208
>11_01_0807 -
7178278-7178548,7178629-7178756,7178847-7179815,
7180465-7180518,7180622-7180798,7180913-7181926,
7182038-7182101,7182247-7182563,7182797-7182847
Length = 1014
Score = 26.2 bits (55), Expect = 9.5
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = -1
Query: 320 LVLTRVLLPCTAPPPHMLARLVPLP 246
L L+ V C P PH L R+ P P
Sbjct: 632 LYLSHVAASCDHPAPHQLLRVPPSP 656
>08_01_1069 +
10916376-10916448,10917331-10918031,10918222-10918443,
10918526-10919351,10919437-10919574,10920431-10920569,
10920655-10920781,10921895-10921936,10922089-10922160,
10922491-10922589,10922694-10922735,10922947-10923027,
10923129-10923179,10923265-10923346,10923741-10923835,
10924739-10924810,10924907-10925023,10925176-10925244,
10925507-10925573,10925709-10925950
Length = 1118
Score = 26.2 bits (55), Expect = 9.5
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -1
Query: 323 PLVLTRVLLPCTAPPPHMLARLVPL 249
P+ +T V+ CT PP +L L P+
Sbjct: 605 PITVTPVVTKCTPSPPPLLPPLAPV 629
>04_04_1053 -
30431236-30431428,30431794-30431856,30433497-30433615,
30433696-30433797,30434588-30434677,30434851-30435141,
30435218-30435373,30435466-30435699
Length = 415
Score = 26.2 bits (55), Expect = 9.5
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = -1
Query: 353 WNEGGVAAPSPLVLTRVLLPCTAPPPHMLARLV 255
W G APSP ++ L C AP + A L+
Sbjct: 24 WRADGARAPSPALVAVKPLSCRAPASYRSALLL 56
>04_03_0309 - 14186880-14187151,14187428-14188652
Length = 498
Score = 26.2 bits (55), Expect = 9.5
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = -1
Query: 335 AAPSPLVLTRVLLPCTAPPPHM 270
AA S L L V LPCT PH+
Sbjct: 41 AAASALALLGVPLPCTCARPHL 62
>03_05_0032 + 20043252-20044361
Length = 369
Score = 26.2 bits (55), Expect = 9.5
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = +2
Query: 155 GQLRALLDEAITYKCPKDREGKSSLFKELLEEVEQ 259
GQ ++D +TY +D ++ LF+++LEE+EQ
Sbjct: 230 GQSDDMVDFDMTYYRSRD-PNRARLFEDVLEEIEQ 263
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,264,955
Number of Sequences: 37544
Number of extensions: 209585
Number of successful extensions: 926
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 890
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 925
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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