Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1699
(398 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL110490-3|CAB54449.1| 892|Caenorhabditis elegans Hypothetical ... 30 0.70
Z73971-1|CAA98249.2| 929|Caenorhabditis elegans Hypothetical pr... 29 1.2
AF224743-1|AAF82248.1| 929|Caenorhabditis elegans leucine-rich ... 29 1.2
AL033514-34|CAA22113.1| 463|Caenorhabditis elegans Hypothetical... 27 3.7
AL033514-33|CAB54500.1| 480|Caenorhabditis elegans Hypothetical... 27 3.7
AF160493-1|AAD43348.1| 465|Caenorhabditis elegans DNA-binding p... 27 3.7
AF160492-1|AAD43347.1| 463|Caenorhabditis elegans DNA-binding p... 27 3.7
U56933-1|AAB66712.1| 212|Caenorhabditis elegans GTP binding pro... 27 5.0
U56930-1|AAB03320.1| 212|Caenorhabditis elegans R-ras1 homolog ... 27 5.0
U39848-7|AAA80693.3| 230|Caenorhabditis elegans Hypothetical pr... 27 5.0
CU457742-2|CAM36363.1| 168|Caenorhabditis elegans Hypothetical ... 27 5.0
CU457742-1|CAM36362.1| 212|Caenorhabditis elegans Hypothetical ... 27 5.0
Z83103-9|CAI79157.1| 376|Caenorhabditis elegans Hypothetical pr... 27 6.5
U39850-12|AAZ32806.1| 1336|Caenorhabditis elegans Hypothetical p... 27 6.5
U39850-11|AAZ32807.1| 1331|Caenorhabditis elegans Hypothetical p... 27 6.5
AL031635-4|CAA21043.2| 269|Caenorhabditis elegans Hypothetical ... 27 6.5
Z78416-1|CAB01682.1| 425|Caenorhabditis elegans Hypothetical pr... 26 8.7
Z68108-14|CAA92133.3| 2066|Caenorhabditis elegans Hypothetical p... 26 8.7
Z68108-13|CAF31493.1| 2048|Caenorhabditis elegans Hypothetical p... 26 8.7
Z68108-12|CAF31492.1| 2101|Caenorhabditis elegans Hypothetical p... 26 8.7
Z68108-11|CAF31491.1| 2134|Caenorhabditis elegans Hypothetical p... 26 8.7
Z68108-10|CAF31490.1| 1888|Caenorhabditis elegans Hypothetical p... 26 8.7
Z68108-9|CAF31489.1| 1927|Caenorhabditis elegans Hypothetical pr... 26 8.7
Z68108-7|CAF31487.1| 1692|Caenorhabditis elegans Hypothetical pr... 26 8.7
Z68108-6|CAF31486.1| 537|Caenorhabditis elegans Hypothetical pr... 26 8.7
Z47358-8|CAA87433.1| 702|Caenorhabditis elegans Hypothetical pr... 26 8.7
AY390551-1|AAQ94963.1| 926|Caenorhabditis elegans SMA-9 class I... 26 8.7
AY390550-1|AAQ94962.1| 537|Caenorhabditis elegans SMA-9 class I... 26 8.7
AY390549-1|AAQ94961.1| 411|Caenorhabditis elegans SMA-9 class I... 26 8.7
AY390548-1|AAQ94960.1| 352|Caenorhabditis elegans SMA-9 class I... 26 8.7
AY390547-1|AAQ94959.1| 337|Caenorhabditis elegans SMA-9 class I... 26 8.7
AY390545-1|AAQ94957.1| 792|Caenorhabditis elegans SMA-9 class I... 26 8.7
AY390543-1|AAQ94955.1| 251|Caenorhabditis elegans SMA-9 class I... 26 8.7
AY390542-1|AAQ94954.1| 468|Caenorhabditis elegans SMA-9 class I... 26 8.7
AY390541-1|AAQ94953.1| 521|Caenorhabditis elegans SMA-9 class I... 26 8.7
AY390539-1|AAQ94951.1| 465|Caenorhabditis elegans SMA-9 class I... 26 8.7
AY390538-1|AAQ94950.1| 591|Caenorhabditis elegans SMA-9 class I... 26 8.7
AF293976-1|AAG17881.1| 425|Caenorhabditis elegans CAB-1 protein. 26 8.7
AC024791-7|AAU20833.1| 278|Caenorhabditis elegans Hypothetical ... 26 8.7
>AL110490-3|CAB54449.1| 892|Caenorhabditis elegans Hypothetical
protein Y48B6A.3 protein.
Length = 892
Score = 29.9 bits (64), Expect = 0.70
Identities = 23/74 (31%), Positives = 29/74 (39%), Gaps = 2/74 (2%)
Frame = +1
Query: 139 RNLGRRSTSSAPR*SHHVQMSQRS*GQKQSFQGTS*GSGTRRASM*GGGAVHGRRTRVKT 318
RN G R R +H Q QR G + G G G GGG+ H + +
Sbjct: 802 RNYGGRDGGGPQR--YHDQQQQRQGGYQGGGYGGGYGGGGGGGGGGGGGSYHQPYNQDQR 859
Query: 319 RG--EGAATPPSFQ 354
RG G PP +Q
Sbjct: 860 RGGRGGGGGPPGYQ 873
>Z73971-1|CAA98249.2| 929|Caenorhabditis elegans Hypothetical
protein C50H2.1 protein.
Length = 929
Score = 29.1 bits (62), Expect = 1.2
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Frame = +2
Query: 47 LHNLVTDQQTNSDLKPMNSIGNSDVENNKHVETLDDGQLRAL--LDEAITYKCPKDRE 214
LHN T + SI +++N+ H+E +D L L L + KCP RE
Sbjct: 90 LHNTSISVITPNFFDKFPSIRELEIDNSAHLEHIDGSSLSVLSKLRKLSVVKCPNLRE 147
>AF224743-1|AAF82248.1| 929|Caenorhabditis elegans leucine-rich
repeat-containingG protein-coupled receptor protein.
Length = 929
Score = 29.1 bits (62), Expect = 1.2
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Frame = +2
Query: 47 LHNLVTDQQTNSDLKPMNSIGNSDVENNKHVETLDDGQLRAL--LDEAITYKCPKDRE 214
LHN T + SI +++N+ H+E +D L L L + KCP RE
Sbjct: 90 LHNTSISVITPNFFDKFPSIRELEIDNSAHLEHIDGSSLSVLSKLRKLSVVKCPNLRE 147
>AL033514-34|CAA22113.1| 463|Caenorhabditis elegans Hypothetical
protein Y75B8A.35b protein.
Length = 463
Score = 27.5 bits (58), Expect = 3.7
Identities = 19/64 (29%), Positives = 27/64 (42%)
Frame = +2
Query: 5 DKSATCVSSDDTKVLHNLVTDQQTNSDLKPMNSIGNSDVENNKHVETLDDGQLRALLDEA 184
D T V + KVL L + Q L +N+ + + K D+ Q A DEA
Sbjct: 65 DVEMTAVDKNPDKVLFELRVETQIEPTLNYINAENEAVEWDIKSYYDFDNPQRPAQADEA 124
Query: 185 ITYK 196
TY+
Sbjct: 125 ATYQ 128
>AL033514-33|CAB54500.1| 480|Caenorhabditis elegans Hypothetical
protein Y75B8A.35a protein.
Length = 480
Score = 27.5 bits (58), Expect = 3.7
Identities = 19/64 (29%), Positives = 27/64 (42%)
Frame = +2
Query: 5 DKSATCVSSDDTKVLHNLVTDQQTNSDLKPMNSIGNSDVENNKHVETLDDGQLRALLDEA 184
D T V + KVL L + Q L +N+ + + K D+ Q A DEA
Sbjct: 82 DVEMTAVDKNPDKVLFELRVETQIEPTLNYINAENEAVEWDIKSYYDFDNPQRPAQADEA 141
Query: 185 ITYK 196
TY+
Sbjct: 142 ATYQ 145
>AF160493-1|AAD43348.1| 465|Caenorhabditis elegans DNA-binding
protein ZIP-1 protein.
Length = 465
Score = 27.5 bits (58), Expect = 3.7
Identities = 19/64 (29%), Positives = 27/64 (42%)
Frame = +2
Query: 5 DKSATCVSSDDTKVLHNLVTDQQTNSDLKPMNSIGNSDVENNKHVETLDDGQLRALLDEA 184
D T V + KVL L + Q L +N+ + + K D+ Q A DEA
Sbjct: 82 DVEMTAVDKNPDKVLFELRVETQIEPTLNYINAENEAVEWDIKSYYDFDNPQRPAQADEA 141
Query: 185 ITYK 196
TY+
Sbjct: 142 ATYQ 145
>AF160492-1|AAD43347.1| 463|Caenorhabditis elegans DNA-binding
protein ZIP-1 protein.
Length = 463
Score = 27.5 bits (58), Expect = 3.7
Identities = 19/64 (29%), Positives = 27/64 (42%)
Frame = +2
Query: 5 DKSATCVSSDDTKVLHNLVTDQQTNSDLKPMNSIGNSDVENNKHVETLDDGQLRALLDEA 184
D T V + KVL L + Q L +N+ + + K D+ Q A DEA
Sbjct: 65 DVEMTAVDKNPDKVLFELRVETQIEPTLNYINAENEAVEWDIKSYYDFDNPQRPAQADEA 124
Query: 185 ITYK 196
TY+
Sbjct: 125 ATYQ 128
>U56933-1|AAB66712.1| 212|Caenorhabditis elegans GTP binding
protein protein.
Length = 212
Score = 27.1 bits (57), Expect = 5.0
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +2
Query: 26 SSDDTKVLHNLVTDQQTNSDLKPMNSIGN-SDVENNKHV 139
S ++ K LH L+ + D P+ +GN +D+EN +HV
Sbjct: 103 SFEEVKKLHELICRIKDRDDF-PIILVGNKADLENERHV 140
>U56930-1|AAB03320.1| 212|Caenorhabditis elegans R-ras1 homolog
protein.
Length = 212
Score = 27.1 bits (57), Expect = 5.0
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +2
Query: 26 SSDDTKVLHNLVTDQQTNSDLKPMNSIGN-SDVENNKHV 139
S ++ K LH L+ + D P+ +GN +D+EN +HV
Sbjct: 103 SFEEVKKLHELICRIKDRDDF-PIILVGNKADLENERHV 140
>U39848-7|AAA80693.3| 230|Caenorhabditis elegans Hypothetical
protein B0286.1 protein.
Length = 230
Score = 27.1 bits (57), Expect = 5.0
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +2
Query: 137 VETLDDGQLRALLDEAITYKCPKDREGKSSLFKELLEEVEQD 262
V+TL++ +++ L + K P+DR+ K E + EQD
Sbjct: 185 VQTLEEAKVKKLEEREQMDKHPQDRDNKDKEVNEQPDNEEQD 226
>CU457742-2|CAM36363.1| 168|Caenorhabditis elegans Hypothetical
protein C44C11.1b protein.
Length = 168
Score = 27.1 bits (57), Expect = 5.0
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +2
Query: 26 SSDDTKVLHNLVTDQQTNSDLKPMNSIGN-SDVENNKHV 139
S ++ K LH L+ + D P+ +GN +D+EN +HV
Sbjct: 103 SFEEVKKLHELICRIKDRDDF-PIILVGNKADLENERHV 140
>CU457742-1|CAM36362.1| 212|Caenorhabditis elegans Hypothetical
protein C44C11.1a protein.
Length = 212
Score = 27.1 bits (57), Expect = 5.0
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +2
Query: 26 SSDDTKVLHNLVTDQQTNSDLKPMNSIGN-SDVENNKHV 139
S ++ K LH L+ + D P+ +GN +D+EN +HV
Sbjct: 103 SFEEVKKLHELICRIKDRDDF-PIILVGNKADLENERHV 140
>Z83103-9|CAI79157.1| 376|Caenorhabditis elegans Hypothetical
protein D1025.10 protein.
Length = 376
Score = 26.6 bits (56), Expect = 6.5
Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Frame = +2
Query: 113 SDVENNKHVETLDDGQLRALLD--EAITYKCPKDREGKSSLFKE-LLEEVEQDEQACE 277
+D E+ E +D ++ D E I + ++ EG++ +E ++EEVE+DE+ E
Sbjct: 105 TDDEDTPTPEVIDVSSDESMADVMEEINQEVEEEEEGEAEEGQEEVVEEVEEDEEEVE 162
>U39850-12|AAZ32806.1| 1336|Caenorhabditis elegans Hypothetical
protein F52C9.1a protein.
Length = 1336
Score = 26.6 bits (56), Expect = 6.5
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +3
Query: 129 INMSK-PWTTVNFERSSMKPSRTNVPKIVRAKA 224
IN SK P T+NF+R + P+ T++ I +A
Sbjct: 107 INCSKAPHKTINFQRLQILPNMTSILAIAHTEA 139
>U39850-11|AAZ32807.1| 1331|Caenorhabditis elegans Hypothetical
protein F52C9.1b protein.
Length = 1331
Score = 26.6 bits (56), Expect = 6.5
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +3
Query: 129 INMSK-PWTTVNFERSSMKPSRTNVPKIVRAKA 224
IN SK P T+NF+R + P+ T++ I +A
Sbjct: 107 INCSKAPHKTINFQRLQILPNMTSILAIAHTEA 139
>AL031635-4|CAA21043.2| 269|Caenorhabditis elegans Hypothetical
protein Y47D3B.6 protein.
Length = 269
Score = 26.6 bits (56), Expect = 6.5
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = -1
Query: 335 AAPSPLVLTRVLLPCTAPPPHMLARLVPLPQEVP 234
AAP+ + V +P A PP M+A PLP P
Sbjct: 34 AAPA-VCQASVCIPTAAAPPMMMAPPAPLPAYAP 66
>Z78416-1|CAB01682.1| 425|Caenorhabditis elegans Hypothetical
protein C23H4.1 protein.
Length = 425
Score = 26.2 bits (55), Expect = 8.7
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +2
Query: 122 ENNKHVETLDDGQLRALLDEAITYKCPKDREGKSSL-FKELLEEVEQDEQ 268
+NN+ ET DDG+ ++ K +G +L +K L + +Q +Q
Sbjct: 325 KNNRRTETPDDGEYAPYAGTGPGFRKNKGNKGDETLAYKAQLHQYQQAKQ 374
>Z68108-14|CAA92133.3| 2066|Caenorhabditis elegans Hypothetical
protein T05A10.1a protein.
Length = 2066
Score = 26.2 bits (55), Expect = 8.7
Identities = 20/88 (22%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Frame = +2
Query: 8 KSATCVSSDDTKVLHNLVTDQ-QTNSDLKPMNSIGNSDVENNKHVETLDDGQLRALLDEA 184
+S CV D H ++ ++ + + + S+ V+ + D+G A L++
Sbjct: 1612 RSFMCVDCDIGFRKHGILAKHLRSKTHVMKLESLQRLPVDTLSLITKKDNG---ACLNDI 1668
Query: 185 ITYKCPKDREGKSSLFKELLEEVEQDEQ 268
T C K R ++ ++L E ++DEQ
Sbjct: 1669 DTTDCEKARISLLAIVEKLRNEADKDEQ 1696
>Z68108-13|CAF31493.1| 2048|Caenorhabditis elegans Hypothetical
protein T05A10.1f protein.
Length = 2048
Score = 26.2 bits (55), Expect = 8.7
Identities = 20/88 (22%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Frame = +2
Query: 8 KSATCVSSDDTKVLHNLVTDQ-QTNSDLKPMNSIGNSDVENNKHVETLDDGQLRALLDEA 184
+S CV D H ++ ++ + + + S+ V+ + D+G A L++
Sbjct: 1680 RSFMCVDCDIGFRKHGILAKHLRSKTHVMKLESLQRLPVDTLSLITKKDNG---ACLNDI 1736
Query: 185 ITYKCPKDREGKSSLFKELLEEVEQDEQ 268
T C K R ++ ++L E ++DEQ
Sbjct: 1737 DTTDCEKARISLLAIVEKLRNEADKDEQ 1764
>Z68108-12|CAF31492.1| 2101|Caenorhabditis elegans Hypothetical
protein T05A10.1e protein.
Length = 2101
Score = 26.2 bits (55), Expect = 8.7
Identities = 20/88 (22%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Frame = +2
Query: 8 KSATCVSSDDTKVLHNLVTDQ-QTNSDLKPMNSIGNSDVENNKHVETLDDGQLRALLDEA 184
+S CV D H ++ ++ + + + S+ V+ + D+G A L++
Sbjct: 1680 RSFMCVDCDIGFRKHGILAKHLRSKTHVMKLESLQRLPVDTLSLITKKDNG---ACLNDI 1736
Query: 185 ITYKCPKDREGKSSLFKELLEEVEQDEQ 268
T C K R ++ ++L E ++DEQ
Sbjct: 1737 DTTDCEKARISLLAIVEKLRNEADKDEQ 1764
>Z68108-11|CAF31491.1| 2134|Caenorhabditis elegans Hypothetical
protein T05A10.1d protein.
Length = 2134
Score = 26.2 bits (55), Expect = 8.7
Identities = 20/88 (22%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Frame = +2
Query: 8 KSATCVSSDDTKVLHNLVTDQ-QTNSDLKPMNSIGNSDVENNKHVETLDDGQLRALLDEA 184
+S CV D H ++ ++ + + + S+ V+ + D+G A L++
Sbjct: 1680 RSFMCVDCDIGFRKHGILAKHLRSKTHVMKLESLQRLPVDTLSLITKKDNG---ACLNDI 1736
Query: 185 ITYKCPKDREGKSSLFKELLEEVEQDEQ 268
T C K R ++ ++L E ++DEQ
Sbjct: 1737 DTTDCEKARISLLAIVEKLRNEADKDEQ 1764
>Z68108-10|CAF31490.1| 1888|Caenorhabditis elegans Hypothetical
protein T05A10.1g protein.
Length = 1888
Score = 26.2 bits (55), Expect = 8.7
Identities = 20/88 (22%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Frame = +2
Query: 8 KSATCVSSDDTKVLHNLVTDQ-QTNSDLKPMNSIGNSDVENNKHVETLDDGQLRALLDEA 184
+S CV D H ++ ++ + + + S+ V+ + D+G A L++
Sbjct: 1680 RSFMCVDCDIGFRKHGILAKHLRSKTHVMKLESLQRLPVDTLSLITKKDNG---ACLNDI 1736
Query: 185 ITYKCPKDREGKSSLFKELLEEVEQDEQ 268
T C K R ++ ++L E ++DEQ
Sbjct: 1737 DTTDCEKARISLLAIVEKLRNEADKDEQ 1764
>Z68108-9|CAF31489.1| 1927|Caenorhabditis elegans Hypothetical protein
T05A10.1i protein.
Length = 1927
Score = 26.2 bits (55), Expect = 8.7
Identities = 20/88 (22%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Frame = +2
Query: 8 KSATCVSSDDTKVLHNLVTDQ-QTNSDLKPMNSIGNSDVENNKHVETLDDGQLRALLDEA 184
+S CV D H ++ ++ + + + S+ V+ + D+G A L++
Sbjct: 1680 RSFMCVDCDIGFRKHGILAKHLRSKTHVMKLESLQRLPVDTLSLITKKDNG---ACLNDI 1736
Query: 185 ITYKCPKDREGKSSLFKELLEEVEQDEQ 268
T C K R ++ ++L E ++DEQ
Sbjct: 1737 DTTDCEKARISLLAIVEKLRNEADKDEQ 1764
>Z68108-7|CAF31487.1| 1692|Caenorhabditis elegans Hypothetical protein
T05A10.1c protein.
Length = 1692
Score = 26.2 bits (55), Expect = 8.7
Identities = 20/88 (22%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Frame = +2
Query: 8 KSATCVSSDDTKVLHNLVTDQ-QTNSDLKPMNSIGNSDVENNKHVETLDDGQLRALLDEA 184
+S CV D H ++ ++ + + + S+ V+ + D+G A L++
Sbjct: 1238 RSFMCVDCDIGFRKHGILAKHLRSKTHVMKLESLQRLPVDTLSLITKKDNG---ACLNDI 1294
Query: 185 ITYKCPKDREGKSSLFKELLEEVEQDEQ 268
T C K R ++ ++L E ++DEQ
Sbjct: 1295 DTTDCEKARISLLAIVEKLRNEADKDEQ 1322
>Z68108-6|CAF31486.1| 537|Caenorhabditis elegans Hypothetical
protein T05A10.1h protein.
Length = 537
Score = 26.2 bits (55), Expect = 8.7
Identities = 20/88 (22%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Frame = +2
Query: 8 KSATCVSSDDTKVLHNLVTDQ-QTNSDLKPMNSIGNSDVENNKHVETLDDGQLRALLDEA 184
+S CV D H ++ ++ + + + S+ V+ + D+G A L++
Sbjct: 328 RSFMCVDCDIGFRKHGILAKHLRSKTHVMKLESLQRLPVDTLSLITKKDNG---ACLNDI 384
Query: 185 ITYKCPKDREGKSSLFKELLEEVEQDEQ 268
T C K R ++ ++L E ++DEQ
Sbjct: 385 DTTDCEKARISLLAIVEKLRNEADKDEQ 412
>Z47358-8|CAA87433.1| 702|Caenorhabditis elegans Hypothetical
protein ZK1307.6 protein.
Length = 702
Score = 26.2 bits (55), Expect = 8.7
Identities = 18/47 (38%), Positives = 21/47 (44%)
Frame = +1
Query: 115 GRGEQ*TCRNLGRRSTSSAPR*SHHVQMSQRS*GQKQSFQGTS*GSG 255
G G T + + S SS P HH S S +QGTS GSG
Sbjct: 122 GLGALATAPSSSQSSLSSHPH-QHHNHHSSSSSSYHDYYQGTSSGSG 167
>AY390551-1|AAQ94963.1| 926|Caenorhabditis elegans SMA-9 class IIc
protein.
Length = 926
Score = 26.2 bits (55), Expect = 8.7
Identities = 20/88 (22%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Frame = +2
Query: 8 KSATCVSSDDTKVLHNLVTDQ-QTNSDLKPMNSIGNSDVENNKHVETLDDGQLRALLDEA 184
+S CV D H ++ ++ + + + S+ V+ + D+G A L++
Sbjct: 679 RSFMCVDCDIGFRKHGILAKHLRSKTHVMKLESLQRLPVDTLSLITKKDNG---ACLNDI 735
Query: 185 ITYKCPKDREGKSSLFKELLEEVEQDEQ 268
T C K R ++ ++L E ++DEQ
Sbjct: 736 DTTDCEKARISLLAIVEKLRNEADKDEQ 763
>AY390550-1|AAQ94962.1| 537|Caenorhabditis elegans SMA-9 class IIb
protein.
Length = 537
Score = 26.2 bits (55), Expect = 8.7
Identities = 20/88 (22%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Frame = +2
Query: 8 KSATCVSSDDTKVLHNLVTDQ-QTNSDLKPMNSIGNSDVENNKHVETLDDGQLRALLDEA 184
+S CV D H ++ ++ + + + S+ V+ + D+G A L++
Sbjct: 328 RSFMCVDCDIGFRKHGILAKHLRSKTHVMKLESLQRLPVDTLSLITKKDNG---ACLNDI 384
Query: 185 ITYKCPKDREGKSSLFKELLEEVEQDEQ 268
T C K R ++ ++L E ++DEQ
Sbjct: 385 DTTDCEKARISLLAIVEKLRNEADKDEQ 412
>AY390549-1|AAQ94961.1| 411|Caenorhabditis elegans SMA-9 class IIb
protein.
Length = 411
Score = 26.2 bits (55), Expect = 8.7
Identities = 20/88 (22%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Frame = +2
Query: 8 KSATCVSSDDTKVLHNLVTDQ-QTNSDLKPMNSIGNSDVENNKHVETLDDGQLRALLDEA 184
+S CV D H ++ ++ + + + S+ V+ + D+G A L++
Sbjct: 202 RSFMCVDCDIGFRKHGILAKHLRSKTHVMKLESLQRLPVDTLSLITKKDNG---ACLNDI 258
Query: 185 ITYKCPKDREGKSSLFKELLEEVEQDEQ 268
T C K R ++ ++L E ++DEQ
Sbjct: 259 DTTDCEKARISLLAIVEKLRNEADKDEQ 286
>AY390548-1|AAQ94960.1| 352|Caenorhabditis elegans SMA-9 class IIb
protein.
Length = 352
Score = 26.2 bits (55), Expect = 8.7
Identities = 20/88 (22%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Frame = +2
Query: 8 KSATCVSSDDTKVLHNLVTDQ-QTNSDLKPMNSIGNSDVENNKHVETLDDGQLRALLDEA 184
+S CV D H ++ ++ + + + S+ V+ + D+G A L++
Sbjct: 143 RSFMCVDCDIGFRKHGILAKHLRSKTHVMKLESLQRLPVDTLSLITKKDNG---ACLNDI 199
Query: 185 ITYKCPKDREGKSSLFKELLEEVEQDEQ 268
T C K R ++ ++L E ++DEQ
Sbjct: 200 DTTDCEKARISLLAIVEKLRNEADKDEQ 227
>AY390547-1|AAQ94959.1| 337|Caenorhabditis elegans SMA-9 class IIb
protein.
Length = 337
Score = 26.2 bits (55), Expect = 8.7
Identities = 20/88 (22%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Frame = +2
Query: 8 KSATCVSSDDTKVLHNLVTDQ-QTNSDLKPMNSIGNSDVENNKHVETLDDGQLRALLDEA 184
+S CV D H ++ ++ + + + S+ V+ + D+G A L++
Sbjct: 128 RSFMCVDCDIGFRKHGILAKHLRSKTHVMKLESLQRLPVDTLSLITKKDNG---ACLNDI 184
Query: 185 ITYKCPKDREGKSSLFKELLEEVEQDEQ 268
T C K R ++ ++L E ++DEQ
Sbjct: 185 DTTDCEKARISLLAIVEKLRNEADKDEQ 212
>AY390545-1|AAQ94957.1| 792|Caenorhabditis elegans SMA-9 class IIb
protein.
Length = 792
Score = 26.2 bits (55), Expect = 8.7
Identities = 20/88 (22%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Frame = +2
Query: 8 KSATCVSSDDTKVLHNLVTDQ-QTNSDLKPMNSIGNSDVENNKHVETLDDGQLRALLDEA 184
+S CV D H ++ ++ + + + S+ V+ + D+G A L++
Sbjct: 583 RSFMCVDCDIGFRKHGILAKHLRSKTHVMKLESLQRLPVDTLSLITKKDNG---ACLNDI 639
Query: 185 ITYKCPKDREGKSSLFKELLEEVEQDEQ 268
T C K R ++ ++L E ++DEQ
Sbjct: 640 DTTDCEKARISLLAIVEKLRNEADKDEQ 667
>AY390543-1|AAQ94955.1| 251|Caenorhabditis elegans SMA-9 class IIa
protein.
Length = 251
Score = 26.2 bits (55), Expect = 8.7
Identities = 20/88 (22%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Frame = +2
Query: 8 KSATCVSSDDTKVLHNLVTDQ-QTNSDLKPMNSIGNSDVENNKHVETLDDGQLRALLDEA 184
+S CV D H ++ ++ + + + S+ V+ + D+G A L++
Sbjct: 43 RSFMCVDCDIGFRKHGILAKHLRSKTHVMKLESLQRLPVDTLSLITKKDNG---ACLNDI 99
Query: 185 ITYKCPKDREGKSSLFKELLEEVEQDEQ 268
T C K R ++ ++L E ++DEQ
Sbjct: 100 DTTDCEKARISLLAIVEKLRNEADKDEQ 127
>AY390542-1|AAQ94954.1| 468|Caenorhabditis elegans SMA-9 class IIa
protein.
Length = 468
Score = 26.2 bits (55), Expect = 8.7
Identities = 20/88 (22%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Frame = +2
Query: 8 KSATCVSSDDTKVLHNLVTDQ-QTNSDLKPMNSIGNSDVENNKHVETLDDGQLRALLDEA 184
+S CV D H ++ ++ + + + S+ V+ + D+G A L++
Sbjct: 260 RSFMCVDCDIGFRKHGILAKHLRSKTHVMKLESLQRLPVDTLSLITKKDNG---ACLNDI 316
Query: 185 ITYKCPKDREGKSSLFKELLEEVEQDEQ 268
T C K R ++ ++L E ++DEQ
Sbjct: 317 DTTDCEKARISLLAIVEKLRNEADKDEQ 344
>AY390541-1|AAQ94953.1| 521|Caenorhabditis elegans SMA-9 class Ib
protein.
Length = 521
Score = 26.2 bits (55), Expect = 8.7
Identities = 20/88 (22%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Frame = +2
Query: 8 KSATCVSSDDTKVLHNLVTDQ-QTNSDLKPMNSIGNSDVENNKHVETLDDGQLRALLDEA 184
+S CV D H ++ ++ + + + S+ V+ + D+G A L++
Sbjct: 100 RSFMCVDCDIGFRKHGILAKHLRSKTHVMKLESLQRLPVDTLSLITKKDNG---ACLNDI 156
Query: 185 ITYKCPKDREGKSSLFKELLEEVEQDEQ 268
T C K R ++ ++L E ++DEQ
Sbjct: 157 DTTDCEKARISLLAIVEKLRNEADKDEQ 184
>AY390539-1|AAQ94951.1| 465|Caenorhabditis elegans SMA-9 class Ia
protein.
Length = 465
Score = 26.2 bits (55), Expect = 8.7
Identities = 20/88 (22%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Frame = +2
Query: 8 KSATCVSSDDTKVLHNLVTDQ-QTNSDLKPMNSIGNSDVENNKHVETLDDGQLRALLDEA 184
+S CV D H ++ ++ + + + S+ V+ + D+G A L++
Sbjct: 11 RSFMCVDCDIGFRKHGILAKHLRSKTHVMKLESLQRLPVDTLSLITKKDNG---ACLNDI 67
Query: 185 ITYKCPKDREGKSSLFKELLEEVEQDEQ 268
T C K R ++ ++L E ++DEQ
Sbjct: 68 DTTDCEKARISLLAIVEKLRNEADKDEQ 95
>AY390538-1|AAQ94950.1| 591|Caenorhabditis elegans SMA-9 class Ia
protein.
Length = 591
Score = 26.2 bits (55), Expect = 8.7
Identities = 20/88 (22%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Frame = +2
Query: 8 KSATCVSSDDTKVLHNLVTDQ-QTNSDLKPMNSIGNSDVENNKHVETLDDGQLRALLDEA 184
+S CV D H ++ ++ + + + S+ V+ + D+G A L++
Sbjct: 137 RSFMCVDCDIGFRKHGILAKHLRSKTHVMKLESLQRLPVDTLSLITKKDNG---ACLNDI 193
Query: 185 ITYKCPKDREGKSSLFKELLEEVEQDEQ 268
T C K R ++ ++L E ++DEQ
Sbjct: 194 DTTDCEKARISLLAIVEKLRNEADKDEQ 221
>AF293976-1|AAG17881.1| 425|Caenorhabditis elegans CAB-1 protein.
Length = 425
Score = 26.2 bits (55), Expect = 8.7
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +2
Query: 122 ENNKHVETLDDGQLRALLDEAITYKCPKDREGKSSL-FKELLEEVEQDEQ 268
+NN+ ET DDG+ ++ K +G +L +K L + +Q +Q
Sbjct: 325 KNNRRTETPDDGEYAPYAGTGPGFRKNKGNKGDETLAYKAQLHQYQQAKQ 374
>AC024791-7|AAU20833.1| 278|Caenorhabditis elegans Hypothetical
protein Y47G6A.15 protein.
Length = 278
Score = 26.2 bits (55), Expect = 8.7
Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Frame = +2
Query: 14 ATCVSSDDTKVLHNLVTDQQTNSDLKP-MNSIGNSDVENNKHVETLDDGQLRALLDE 181
A CVSSD T N V T++ L MNS+ N +T Q L+++
Sbjct: 10 AACVSSDATNDSKNAVLGASTSTQLASIMNSLHNLQGGGPNAQQTYTGAQYNRLVEK 66
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,178,829
Number of Sequences: 27780
Number of extensions: 155475
Number of successful extensions: 550
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 550
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 619699724
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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