Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1698
         (704 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr 2...    51   1e-07
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy...    27   2.6  
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc...    27   3.5  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   3.5  
SPAC4A8.09c |cwf21||complexed with Cdc5 protein Cwf21 |Schizosac...    26   6.0  
SPBPB21E7.04c ||SPAPB21E7.04c, SPAPB21E7.04c|S-adenosylmethionin...    26   6.0  
SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces p...    25   8.0  
SPAC26H5.06 |pot1||telomere end-binding protein Pot1 |Schizosacc...    25   8.0  

>SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 497

 Score = 51.2 bits (117), Expect = 1e-07
 Identities = 34/115 (29%), Positives = 55/115 (47%), Gaps = 4/115 (3%)
 Frame = +1

Query: 286 NYTKYDQLGILFDKLESTYPDLAKLYSIGNSVEGRKLLVLQITQDVQNEHPERPAFKYV- 462
           +Y   + +      + S Y DL++L  +G + EGR +L L++     +++ E+   K V 
Sbjct: 182 SYQNLESINSWLRLMASLYKDLSELVPVGITAEGRTILGLKLNGRHPSDNGEKIRNKKVI 241

Query: 463 ---ANMHGDESIGRQIVIYLAQYLLLNYGKNERVTKLVNSTDIHLMPSLNPDGFE 618
                 H  E IG   V Y A  LL  Y  +  V KL++  +   +P LN DG+E
Sbjct: 242 IIQGGSHAREWIGIPSVCYAAWQLLAKYDSDGHVRKLLDKFEWIFIPVLNVDGYE 296


>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1142

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +1

Query: 349 LAKLYSIGNSVEGRKLLVLQITQDVQN 429
           LAKLYS  N +EG  +++   T+ ++N
Sbjct: 895 LAKLYSWTNRIEGENIILSNETEVIEN 921


>SPBC2F12.05c |||sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1310

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = +1

Query: 214 FSLTIAKAQVSAVTNEDESFLKTSNYTKYDQLGILFDKLESTYPDLAK 357
           F++ IAK QV  +    +S ++T    K   L  +FD + +++  L K
Sbjct: 409 FNVNIAKLQVETLHKLIDSAMQTEKVKKDPSLSQVFDGISNSFNTLHK 456


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 17/55 (30%), Positives = 27/55 (49%)
 Frame = +1

Query: 256 NEDESFLKTSNYTKYDQLGILFDKLESTYPDLAKLYSIGNSVEGRKLLVLQITQD 420
           N D  ++   N T Y Q   + DKL S    L K+Y + + V  +  +V +IT +
Sbjct: 67  NNDPEYVMCYN-TVYHQKTKINDKLLSETEQLRKIYPLESRVFPKPTIVKEITNE 120


>SPAC4A8.09c |cwf21||complexed with Cdc5 protein Cwf21
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 293

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = +3

Query: 165 RSYDKDVSLDSHVDTAVFSNNRQSTSFSSHK*GRILSKDIKLY 293
           + YDK+ +L S+ +        Q  S S H+  R +   + LY
Sbjct: 28  KKYDKNTNLQSNRNAKALEKRVQDPSISEHECRRQIESKLLLY 70


>SPBPB21E7.04c ||SPAPB21E7.04c,
           SPAPB21E7.04c|S-adenosylmethionine-dependent
           methyltransferase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 281

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 10/31 (32%), Positives = 22/31 (70%)
 Frame = +1

Query: 460 VANMHGDESIGRQIVIYLAQYLLLNYGKNER 552
           V+N++G + IG+  +IY ++ + ++ GK E+
Sbjct: 239 VSNVNGPQFIGKWNIIYKSKTIKVDDGKREK 269


>SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 226

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 16/59 (27%), Positives = 30/59 (50%)
 Frame = -3

Query: 594 WHQVYICAVHQLRDPFIFTIVQ*QVLSQIYHYLSSNRFIAVHICHVFKRWTFRVFILHV 418
           W+Q+Y C   +  + F+        LS+   YL    F+++H+ +VF+ + +  F L V
Sbjct: 147 WYQLYSCKKEESSNKFLCP------LSKYLIYL----FLSIHLFYVFQSFPWTYFCLAV 195


>SPAC26H5.06 |pot1||telomere end-binding protein Pot1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 555

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 11/38 (28%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +2

Query: 239 KFQQSQMRTNPF*RHQIIRNTTN-LVFYLTNSKAPIRI 349
           K  QSQ   NPF  H++ + + N +  ++ N  A +++
Sbjct: 350 KLSQSQQSENPFIAHELKQTSVNEITAHVINEPASLKL 387


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,988,276
Number of Sequences: 5004
Number of extensions: 65087
Number of successful extensions: 176
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)