Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1698
(704 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0324 - 2357432-2357724,2358042-2358105,2358321-2358404,235... 69 5e-12
06_01_0286 - 2094920-2097805 31 1.2
11_01_0799 + 7035380-7036148,7036587-7037080 30 1.6
04_03_0659 - 18453778-18453903,18453976-18454963,18455496-184562... 29 4.8
03_05_0226 - 22115285-22115404,22115477-22116661,22117037-221178... 29 4.8
03_03_0050 - 14086954-14087079,14087152-14088045 29 4.8
12_02_0522 - 19960092-19960595,19962737-19962880,19963042-199631... 28 6.3
04_04_0923 + 29441740-29441980,29442321-29442401,29442630-294427... 28 6.3
>06_01_0324 -
2357432-2357724,2358042-2358105,2358321-2358404,
2358638-2358715,2359298-2359360,2359459-2359561,
2359675-2359800,2360212-2360258,2361284-2361388,
2361483-2361605,2361759-2361854,2362052-2362141,
2362759-2362815,2362899-2363028,2363613-2363708,
2363815-2363875,2364391-2364490
Length = 571
Score = 68.5 bits (160), Expect = 5e-12
Identities = 27/64 (42%), Positives = 44/64 (68%)
Frame = +1
Query: 457 YVANMHGDESIGRQIVIYLAQYLLLNYGKNERVTKLVNSTDIHLMPSLNPDGFEASQEGN 636
YV N+HGDE +GR+++I LA +L NY K+ T +V + +H++P++NPDGF + GN
Sbjct: 179 YVGNVHGDEPVGREVLIKLANWLCDNYLKDPLATLIVKNMHLHILPTMNPDGFALRRRGN 238
Query: 637 CESL 648
++
Sbjct: 239 ANNV 242
>06_01_0286 - 2094920-2097805
Length = 961
Score = 30.7 bits (66), Expect = 1.2
Identities = 14/61 (22%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Frame = +1
Query: 190 WIRMLILLFSLTIAKAQVSAVTNEDESFLKTSNYTKYDQLGILFDKLESTYPD-LAKLYS 366
W++ L +L SL + + + + +++ L SN+T +++ + + S +P+ LA +Y+
Sbjct: 197 WLQSLNMLASLKVLRLSGTNLPPTNQNSLSQSNFTVLNEIDLSGNNFSSRFPNWLASIYT 256
Query: 367 I 369
+
Sbjct: 257 L 257
>11_01_0799 + 7035380-7036148,7036587-7037080
Length = 420
Score = 30.3 bits (65), Expect = 1.6
Identities = 15/54 (27%), Positives = 28/54 (51%)
Frame = +1
Query: 433 HPERPAFKYVANMHGDESIGRQIVIYLAQYLLLNYGKNERVTKLVNSTDIHLMP 594
H PA+ + + HGDE + +L ++ G+NE V+ + +S D ++P
Sbjct: 240 HHHGPAWDEINHHHGDEGVHLDSDKFLLAGPEVSVGRNEPVSSVASSYDALILP 293
>04_03_0659 -
18453778-18453903,18453976-18454963,18455496-18456229,
18456292-18456360,18456528-18456605,18456703-18456789,
18456881-18456931,18457021-18457092,18457177-18457304,
18458194-18458275,18458705-18458754,18459043-18459096,
18459586-18459675,18459903-18459983,18460443-18460538,
18460960-18461022,18461313-18461402,18461630-18461698,
18462051-18462291
Length = 1082
Score = 28.7 bits (61), Expect = 4.8
Identities = 18/72 (25%), Positives = 38/72 (52%), Gaps = 6/72 (8%)
Frame = +2
Query: 290 IRNTTNLVFYLTNSKAPIRIWRSY------IRLGIPSKVGSCWYYK*RRTCRMNTRNVQR 451
I+N L + + +K P ++W Y ++L SK+ + + +RT R+ V++
Sbjct: 747 IQNLEQLDDHNSRTKRPSKLWSHYYIEYQAVKL-YNSKIFKKFQVELKRTTRLQLIEVEK 805
Query: 452 LNTWQICTAMNR 487
L T+++ A+N+
Sbjct: 806 LKTYEVFLALNQ 817
>03_05_0226 -
22115285-22115404,22115477-22116661,22117037-22117861,
22118029-22118106,22118370-22118420,22118510-22118581,
22118666-22118667,22119453-22119557,22119668-22119749,
22120178-22120227,22120514-22120567,22121084-22121164,
22121567-22121656,22121884-22121964,22122304-22122544
Length = 1038
Score = 28.7 bits (61), Expect = 4.8
Identities = 18/72 (25%), Positives = 38/72 (52%), Gaps = 6/72 (8%)
Frame = +2
Query: 290 IRNTTNLVFYLTNSKAPIRIWRSY------IRLGIPSKVGSCWYYK*RRTCRMNTRNVQR 451
I+N L + + +K P ++W Y ++L SK+ + + +RT R+ V++
Sbjct: 705 IQNLEQLDDHNSRTKRPSKLWSHYYIEYQAVKL-YNSKIFKKFQVELKRTTRLQLIEVEK 763
Query: 452 LNTWQICTAMNR 487
L T+++ A+N+
Sbjct: 764 LKTYEVFLALNQ 775
>03_03_0050 - 14086954-14087079,14087152-14088045
Length = 339
Score = 28.7 bits (61), Expect = 4.8
Identities = 18/72 (25%), Positives = 38/72 (52%), Gaps = 6/72 (8%)
Frame = +2
Query: 290 IRNTTNLVFYLTNSKAPIRIWRSY------IRLGIPSKVGSCWYYK*RRTCRMNTRNVQR 451
I+N L + + +K P ++W Y ++L SK+ + + +RT R+ V++
Sbjct: 4 IQNLEQLDDHNSRTKRPSKLWSHYYIEYQAVKL-YNSKIFKKFQVELKRTTRLQLIEVEK 62
Query: 452 LNTWQICTAMNR 487
L T+++ A+N+
Sbjct: 63 LKTYEVFLALNQ 74
>12_02_0522 -
19960092-19960595,19962737-19962880,19963042-19963131,
19963215-19963320,19963400-19963574,19963849-19963951,
19964382-19964636,19964726-19964803,19964908-19965000,
19965091-19965222,19965898-19966002,19966127-19966201,
19966284-19966340,19966419-19966532,19966613-19966756,
19966886-19966969,19967071-19967164,19967244-19967369,
19967507-19967580,19967672-19967875,19968234-19968388,
19968860-19968947,19969505-19969730,19970235-19970286,
19970766-19970958,19973221-19973314,19973744-19973788,
19974874-19974896
Length = 1210
Score = 28.3 bits (60), Expect = 6.3
Identities = 21/75 (28%), Positives = 35/75 (46%)
Frame = +1
Query: 241 VSAVTNEDESFLKTSNYTKYDQLGILFDKLESTYPDLAKLYSIGNSVEGRKLLVLQITQD 420
+S N D+ NY K+ +LG + DK + +A L +S +L+ L +
Sbjct: 745 ISCSENRDDYERFWENYGKFLKLGCMEDK--ENHKRIAPLLRFFSSQSNEELISLD--EY 800
Query: 421 VQNEHPERPAFKYVA 465
V+N PE+ Y+A
Sbjct: 801 VENMKPEQKDIYYIA 815
>04_04_0923 +
29441740-29441980,29442321-29442401,29442630-29442719,
29443123-29443203,29443721-29443774,29444062-29444111,
29444542-29444623,29444734-29444838,29445514-29445641,
29445726-29445797,29445887-29445937,29446029-29446100,
29446201-29446278,29446446-29447270,29447648-29448556
Length = 972
Score = 28.3 bits (60), Expect = 6.3
Identities = 18/72 (25%), Positives = 38/72 (52%), Gaps = 6/72 (8%)
Frame = +2
Query: 290 IRNTTNLVFYLTNSKAPIRIWRSY------IRLGIPSKVGSCWYYK*RRTCRMNTRNVQR 451
I+N L + + +K P ++W Y ++L SK+ + + +RT R+ V++
Sbjct: 771 IQNLEQLDDHNSRTKRPSKLWSHYYIEYQAVKL-YNSKIFKKFQVELKRTTRLQLIEVEK 829
Query: 452 LNTWQICTAMNR 487
L T+++ A+N+
Sbjct: 830 LKTYKVFLALNQ 841
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,178,661
Number of Sequences: 37544
Number of extensions: 374599
Number of successful extensions: 831
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 804
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 831
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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