Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1697
         (650 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    23   2.2  
AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    23   2.2  
AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein p...    23   2.2  
AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory recept...    23   2.9  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    21   8.8  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -1

Query: 164 FFFLCILFGCMGYFRFSRHIRFL 96
           FF LCI +    +  F+ H+ FL
Sbjct: 141 FFLLCIYYFYCAFIIFTVHLLFL 163



 Score = 22.6 bits (46), Expect = 2.9
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = +1

Query: 10  CKFYNYLVFKCFFLFRLLVLCKKSFVTCYKKRICL 114
           C +Y Y  F  F +  L +LC   FV      +C+
Sbjct: 112 CVYYFYYAFIIFTVHLLFLLCIYYFVVPLFFLLCI 146


>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +3

Query: 546 GSYPPKIEIQSYTTPPEDAPSGMMARGSYSGQ 641
           G+  P+I+ Q    PP  +P   + + SY  Q
Sbjct: 104 GNLSPQIQTQVARPPPARSPYEWIKKTSYQSQ 135


>AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein
           protein.
          Length = 249

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +3

Query: 546 GSYPPKIEIQSYTTPPEDAPSGMMARGSYSGQ 641
           G+  P+I+ Q    PP  +P   + + SY  Q
Sbjct: 104 GNLSPQIQTQVARPPPARSPYEWIKKTSYQSQ 135


>AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory receptor
           candidate 2 protein.
          Length = 587

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +2

Query: 95  IKNEYVWRT*SSPYTRR 145
           IKNE +W+     YTR+
Sbjct: 258 IKNEIIWKKLREDYTRQ 274


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 11/44 (25%), Positives = 23/44 (52%)
 Frame = +3

Query: 441 IRIDFIVQREIVHGLKYVQKTYRLGVPVDKMTHMVGSYPPKIEI 572
           I++  I+ R     LK++ +   L   + + T ++G Y  +IE+
Sbjct: 663 IQVTKIIIRTDHQALKFLSRCRLLSERLTRWTLILGQYDYEIEL 706


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,322
Number of Sequences: 336
Number of extensions: 3120
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16760905
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)