Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1697
(650 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6F12.06 |||Rho GDP dissociation inhibitor Rdi1 |Schizosaccha... 103 2e-23
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22... 31 0.19
SPBC609.02 |ptn1||phosphatidylinositol-3,4,5-trisphosphate3-phos... 27 2.3
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc... 26 4.1
SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces pomb... 26 5.4
SPBPB7E8.01 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 7.2
SPBC36B7.02 |||Svf1 family protein Svf2|Schizosaccharomyces pomb... 25 9.5
SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8 ... 25 9.5
SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual 25 9.5
>SPAC6F12.06 |||Rho GDP dissociation inhibitor Rdi1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 205
Score = 103 bits (247), Expect = 2e-23
Identities = 57/149 (38%), Positives = 85/149 (57%), Gaps = 2/149 (1%)
Frame = +3
Query: 192 EKTIEEILAADQEDESLRKYKEALLGQAQAGAVIVEPDDPRKVIVKKLALCVVGRXXXXX 371
+K++ E + D EDESL+K+K +L G +D R V++ KL+L V GR
Sbjct: 32 KKSLNEYMKMDAEDESLQKWKASL---GITGTGYSPSNDRRTVVILKLSLLVDGRDPVDV 88
Query: 372 XXXXXXXXX--KKQVFVIKEGVQYRIRIDFIVQREIVHGLKYVQKTYRLGVPVDKMTHMV 545
+K+ F IKEG +++I + F VQ E++ GL+YVQ R G VDK + M+
Sbjct: 89 NMEDAASVEQIRKKGFTIKEGSEFKIGVKFRVQHEVISGLRYVQTVRRRGFVVDKTSTMI 148
Query: 546 GSYPPKIEIQSYTTPPEDAPSGMMARGSY 632
GSY P +T+ P++AP+GM+ARG Y
Sbjct: 149 GSYGPSETPYDFTSEPDEAPTGMLARGHY 177
>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
Snf22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1680
Score = 30.7 bits (66), Expect = 0.19
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = +3
Query: 192 EKTIEEILAADQEDESLRKYKEALLGQAQAGAVIVE 299
EKT++E++ +++ SL Y+E L + QA V +E
Sbjct: 1613 EKTLKEVIEDLEKNNSLHAYEEEALNEEQASLVFLE 1648
>SPBC609.02 |ptn1||phosphatidylinositol-3,4,
5-trisphosphate3-phosphatase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 348
Score = 27.1 bits (57), Expect = 2.3
Identities = 12/44 (27%), Positives = 22/44 (50%)
Frame = -1
Query: 479 VHDLALNDKIDPYSVLYTLLYHEYLLFEVGQVPSEIQLDIIAPN 348
+H L ND++D + L T L ++L + + L++ PN
Sbjct: 46 IHKLYRNDELDVFKYLTTQLKDNWILLNLCAEETVYHLELFKPN 89
>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
Apc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1458
Score = 26.2 bits (55), Expect = 4.1
Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Frame = -1
Query: 599 ILGGRCVRLNLNFGGIGADHMSH-LVNWNAQSVGLLHVLQTVHD 471
+L G C L L F G G L+N+ + L H+ HD
Sbjct: 1096 VLAGICFSLGLRFAGTGNPKAKEILINFLDSFIRLCHLPAKTHD 1139
>SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 494
Score = 25.8 bits (54), Expect = 5.4
Identities = 12/45 (26%), Positives = 23/45 (51%)
Frame = +3
Query: 414 VIKEGVQYRIRIDFIVQREIVHGLKYVQKTYRLGVPVDKMTHMVG 548
++ G+ ++I I ++VHG+KY +G+ D +VG
Sbjct: 265 LLSGGLDGHVKIYNISDWKVVHGMKYSGPILSMGLSPDSCNLVVG 309
>SPBPB7E8.01 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 569
Score = 25.4 bits (53), Expect = 7.2
Identities = 10/35 (28%), Positives = 19/35 (54%)
Frame = +3
Query: 507 RLGVPVDKMTHMVGSYPPKIEIQSYTTPPEDAPSG 611
R+G V+ +T + Y + +S + P+ AP+G
Sbjct: 454 RMGYSVNNLTGVTNEYSESLAKRSLSEKPKTAPTG 488
>SPBC36B7.02 |||Svf1 family protein Svf2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 353
Score = 25.0 bits (52), Expect = 9.5
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = -1
Query: 227 LVSSKDLLYGLLWRWLI*GFDFFFLCILFGCMGYFRFS-RHIRFL*QVTKL 78
L+S KDL + L L + F++C G GY + + ++ L +VT L
Sbjct: 14 LISCKDLTWDLSRSHLTTQYKSFYMCFDDGSFGYLQIAYGNLGLLVKVTPL 64
>SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 565
Score = 25.0 bits (52), Expect = 9.5
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +3
Query: 222 DQEDESLRKYKEALLGQAQAGAVIV 296
D+ E+++ YK ALLG +++V
Sbjct: 454 DRPQEAIKSYKRALLGSQTNSSILV 478
>SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 684
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = +2
Query: 407 GIRDKGGCTIPNKDRFY 457
GIRDKGG I NK+ Y
Sbjct: 85 GIRDKGGVEISNKNDPY 101
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,524,573
Number of Sequences: 5004
Number of extensions: 50955
Number of successful extensions: 141
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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