Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1697
(650 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_02_0132 - 12166009-12166089,12166197-12166321,12166489-121667... 109 2e-24
02_05_0539 + 29846439-29846711,29846819-29846885,29847832-298480... 100 2e-21
01_06_1776 - 39815634-39815714,39815761-39815927,39816278-398164... 93 2e-19
04_03_0926 - 20861383-20862198,20862359-20862430,20862938-208631... 30 1.8
08_02_1554 + 27841801-27842007,27842282-27842455,27842554-278426... 29 3.2
07_03_1316 + 25736931-25737206,25737276-25737329,25738036-257381... 28 5.6
06_02_0066 - 11081446-11081544,11081639-11081846,11083122-110832... 28 5.6
03_03_0186 + 15243150-15243563,15243685-15243777,15244604-152446... 28 5.6
03_02_0930 - 12480983-12481888 28 5.6
02_03_0307 + 17546263-17546299,17546522-17548018,17548859-175489... 28 7.4
>06_02_0132 -
12166009-12166089,12166197-12166321,12166489-12166710,
12168194-12168260,12168424-12168741
Length = 270
Score = 109 bits (261), Expect = 2e-24
Identities = 59/153 (38%), Positives = 84/153 (54%), Gaps = 2/153 (1%)
Frame = +3
Query: 189 PEKTIEEILAADQEDESLRKYKEALLGQAQAGAV--IVEPDDPRKVIVKKLALCVVGRXX 362
P +I+E L D+EDESLR++KE LLG +V +EPD V + L + GR
Sbjct: 94 PRVSIKEQLEMDKEDESLRRWKEQLLGSVDLNSVGESLEPD----VRITSLCILSPGRPD 149
Query: 363 XXXXXXXXXXXXKKQVFVIKEGVQYRIRIDFIVQREIVHGLKYVQKTYRLGVPVDKMTHM 542
K+ F +KEG YR++ F V IV GL+Y ++ G+ VDK M
Sbjct: 150 VLLPLPVEPSNSKEPWFTLKEGSTYRLKFTFSVSSNIVSGLRYTNTVWKAGIRVDKTKEM 209
Query: 543 VGSYPPKIEIQSYTTPPEDAPSGMMARGSYSGQ 641
+G++ P++E +Y TP E PSG+ ARGSYS +
Sbjct: 210 LGTFSPQLEPYTYVTPEETTPSGVFARGSYSAK 242
>02_05_0539 +
29846439-29846711,29846819-29846885,29847832-29848050,
29848200-29848324,29848423-29848503
Length = 254
Score = 99.5 bits (237), Expect = 2e-21
Identities = 57/153 (37%), Positives = 82/153 (53%), Gaps = 2/153 (1%)
Frame = +3
Query: 189 PEKTIEEILAADQEDESLRKYKEALLGQAQAGAV--IVEPDDPRKVIVKKLALCVVGRXX 362
P +I++ L D++DESLR++KE LLG +V +EPD V + LA+ GR
Sbjct: 79 PRVSIKDQLEKDKDDESLRRWKEQLLGSVDLNSVGETLEPD----VKIMSLAILSPGRPD 134
Query: 363 XXXXXXXXXXXXKKQVFVIKEGVQYRIRIDFIVQREIVHGLKYVQKTYRLGVPVDKMTHM 542
K F +KEG Y+++ F V IV GL+Y ++ G+ VD M
Sbjct: 135 IFLPLPVEPNA-KGVWFTLKEGSLYKLKFTFSVSNNIVSGLRYTNAVWKTGIKVDSHKEM 193
Query: 543 VGSYPPKIEIQSYTTPPEDAPSGMMARGSYSGQ 641
+G++ P+ E +Y TP E PSGM ARGSYS +
Sbjct: 194 LGTFSPQPEPYTYVTPEETTPSGMFARGSYSAR 226
>01_06_1776 -
39815634-39815714,39815761-39815927,39816278-39816496,
39816614-39816680,39816771-39816932
Length = 231
Score = 92.7 bits (220), Expect = 2e-19
Identities = 54/152 (35%), Positives = 79/152 (51%), Gaps = 1/152 (0%)
Frame = +3
Query: 189 PEKTIEEILAADQEDESLRKYKEALLGQAQAGAVIVEPDDPRKVIVKKLALCVVGRXXXX 368
P+ ++E L D++DESLR++KE LLGQ + E +P VK L L ++
Sbjct: 42 PQVPLKEQLELDKDDESLRRWKEQLLGQVDTEQ-LGETAEPE---VKVLNLTILSPDRPD 97
Query: 369 XXXXXXXXXXKK-QVFVIKEGVQYRIRIDFIVQREIVHGLKYVQKTYRLGVPVDKMTHMV 545
+K F +K+G Y R FIV IV GLKY ++ GV V+ M+
Sbjct: 98 LVLPIPFVPDEKGYAFALKDGSTYSFRFSFIVSNNIVSGLKYTNTVWKTGVRVENQKVML 157
Query: 546 GSYPPKIEIQSYTTPPEDAPSGMMARGSYSGQ 641
G++ P++E +Y E P+GM ARGSYS +
Sbjct: 158 GTFSPQLEPYTYEGEEETTPAGMFARGSYSAK 189
>04_03_0926 -
20861383-20862198,20862359-20862430,20862938-20863123,
20863214-20863304,20863698-20863852,20864501-20864579,
20866797-20867263
Length = 621
Score = 29.9 bits (64), Expect = 1.8
Identities = 16/41 (39%), Positives = 19/41 (46%)
Frame = +3
Query: 180 KPPPEKTIEEILAADQEDESLRKYKEALLGQAQAGAVIVEP 302
KPPP E + AAD E E+ RK +E A V P
Sbjct: 35 KPPPPPAEEGVAAADAEGEARRKQRELRAAAADKRLRAVAP 75
>08_02_1554 +
27841801-27842007,27842282-27842455,27842554-27842653,
27843273-27843725,27843936-27844469,27844500-27844580,
27844690-27844781,27844890-27844963,27845071-27845293,
27845429-27845522,27845607-27845761,27845899-27846129,
27846803-27847003,27847257-27847382,27847497-27847558,
27847775-27847892,27848040-27848324,27848475-27848513
Length = 1082
Score = 29.1 bits (62), Expect = 3.2
Identities = 17/52 (32%), Positives = 25/52 (48%)
Frame = +3
Query: 195 KTIEEILAADQEDESLRKYKEALLGQAQAGAVIVEPDDPRKVIVKKLALCVV 350
K + + AAD++ KYK LG + AV+V PD + + L L V
Sbjct: 197 KALLRVQAADRKYVHKFKYKGVELGVILSYAVLVHPDTAARASISNLQLVTV 248
>07_03_1316 +
25736931-25737206,25737276-25737329,25738036-25738189,
25740235-25740313,25740413-25740492,25740588-25740654,
25741548-25741619,25742071-25742223,25742309-25742392,
25742811-25742877
Length = 361
Score = 28.3 bits (60), Expect = 5.6
Identities = 24/85 (28%), Positives = 34/85 (40%)
Frame = +2
Query: 365 RAGSHWGLDRPQKAGIRDKGGCTIPNKDRFYRSARDRARSEVRAEDLQTGRSS*QDDSYG 544
R+ +G DR ++ R + D + R RD R+ RS DD
Sbjct: 276 RSRDRYGRDRYRERDYRRRSRSRSYTPDDYRRRGRDSVSPARRSLSRSRSRSYSPDDYRK 335
Query: 545 RLLSPQN*DSVLHNAPRGCAVRDDG 619
R N +L + RGC+V DDG
Sbjct: 336 RGKHRMNGVELLMS--RGCSVPDDG 358
>06_02_0066 -
11081446-11081544,11081639-11081846,11083122-11083257,
11083339-11083541,11083616-11083765,11083848-11083964,
11084623-11085119
Length = 469
Score = 28.3 bits (60), Expect = 5.6
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Frame = +3
Query: 549 SYPPKIEIQSYTTPPEDAPSG-MMARGSYSGQQP 647
+YPP + Y+TPP+ +G S S Q P
Sbjct: 359 AYPPANNLNRYSTPPQSTSNGPQSGEASTSNQSP 392
>03_03_0186 +
15243150-15243563,15243685-15243777,15244604-15244666,
15245028-15245114,15245197-15245349,15245422-15245579,
15246458-15246692,15246782-15246892,15246942-15246968,
15247269-15248327,15248432-15248692,15249011-15249196,
15249642-15250793,15250886-15251236,15251343-15251738
Length = 1581
Score = 28.3 bits (60), Expect = 5.6
Identities = 11/36 (30%), Positives = 25/36 (69%)
Frame = -1
Query: 485 QTVHDLALNDKIDPYSVLYTLLYHEYLLFEVGQVPS 378
++V +++L+ ++D Y VLY + E+L+ + Q+P+
Sbjct: 286 ESVLNVSLSGQVDDYCVLYCERFMEFLIDMLSQLPT 321
>03_02_0930 - 12480983-12481888
Length = 301
Score = 28.3 bits (60), Expect = 5.6
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +2
Query: 428 CTIPNKDRFYRSARDRARSEVRAEDL 505
C PN++ +Y ++ DRAR E R + L
Sbjct: 66 CYCPNRESYYLNSADRARQEDRQDML 91
>02_03_0307 +
17546263-17546299,17546522-17548018,17548859-17548949,
17549054-17549621,17550591-17550670,17550993-17551077,
17551172-17551263,17551355-17551423,17551587-17551655,
17552217-17552510,17552761-17552797,17552883-17552972,
17553520-17553585,17553704-17553818,17553902-17553940,
17554519-17554700
Length = 1136
Score = 27.9 bits (59), Expect = 7.4
Identities = 18/47 (38%), Positives = 22/47 (46%)
Frame = -1
Query: 608 GRRILGGRCVRLNLNFGGIGADHMSHLVNWNAQSVGLLHVLQTVHDL 468
GRR LG + VR LNF G D + A+ + L L VH L
Sbjct: 336 GRRPLGDKSVRRKLNFEGDAVDFEGNREFSRAKLMEDLRCLAKVHGL 382
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,216,768
Number of Sequences: 37544
Number of extensions: 358958
Number of successful extensions: 995
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 971
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 991
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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