Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1697
         (650 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42593| Best HMM Match : Rho_GDI (HMM E-Value=3.7e-17)               48   9e-06
SB_5326| Best HMM Match : HEAT (HMM E-Value=3.1e-05)                   29   2.5  
SB_11738| Best HMM Match : SH3_2 (HMM E-Value=3.7e-32)                 28   5.7  
SB_38432| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  
SB_48238| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  
SB_9112| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.6  
SB_8350| Best HMM Match : ShTK (HMM E-Value=2.5e-09)                   28   7.6  

>SB_42593| Best HMM Match : Rho_GDI (HMM E-Value=3.7e-17)
          Length = 339

 Score = 47.6 bits (108), Expect = 9e-06
 Identities = 21/35 (60%), Positives = 24/35 (68%)
 Frame = +3

Query: 528 KMTHMVGSYPPKIEIQSYTTPPEDAPSGMMARGSY 632
           K + MVGSY PK E   Y TP ++AP GMMARG Y
Sbjct: 277 KDSFMVGSYGPKFEPHEYLTPIDEAPKGMMARGKY 311



 Score = 45.6 bits (103), Expect = 4e-05
 Identities = 24/55 (43%), Positives = 33/55 (60%)
 Frame = +3

Query: 177 YKPPPEKTIEEILAADQEDESLRKYKEALLGQAQAGAVIVEPDDPRKVIVKKLAL 341
           Y PP +KT EEI   D +DE+L KYK+ LLG          P  P+ V+V+K+A+
Sbjct: 22  YVPPAQKTWEEIQNLDADDEALVKYKQTLLGVTPEEL----PKGPKNVVVEKVAI 72



 Score = 31.9 bits (69), Expect = 0.47
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +3

Query: 399 KKQVFVIKEGVQYRIRIDF-IVQREIVHGLKYVQKTYRLGVPVDK 530
           K     IKEG  Y+I+I F +   +I+ GL+     YR G+ V K
Sbjct: 139 KDSPITIKEGTYYKIKIIFKVYNDQIISGLRLHNLFYRKGIRVGK 183


>SB_5326| Best HMM Match : HEAT (HMM E-Value=3.1e-05)
          Length = 538

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = -1

Query: 473 DLALNDKIDPYSVLYTLLYHEYLLFEVGQVPSEIQLDIIAPNHTQC*LL 327
           D  L+D    Y +++T LY EYL+ EV       Q D+ + +   C +L
Sbjct: 390 DYVLSDPRTQYELIHTWLYQEYLMQEVKVEEVGDQPDLYSYDQVLCTIL 438


>SB_11738| Best HMM Match : SH3_2 (HMM E-Value=3.7e-32)
          Length = 2436

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +3

Query: 201 IEEILAADQEDESLRKYKEALLGQAQAGA-VIVEPDDPRKVIVKKLALCVV 350
           I ++  +D ED++   YKE   G+  +GA    EPDD    + ++++   +
Sbjct: 781 IRQLAMSDSEDDASSSYKEKPAGRRSSGASQNSEPDDDILTLSQRISQAAI 831


>SB_38432| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 601

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +3

Query: 540 MVGSYPPKIEIQSYTTPPEDAPSGMMARGSYS 635
           ++ SY   I      TPPE A SGM + G Y+
Sbjct: 543 VINSYGQYITTAREQTPPEMAASGMASSGQYT 574


>SB_48238| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 146

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +3

Query: 252 KEALLGQAQAGAVIVEPDDPRKVIVKKLALCVVGR 356
           +E LL +   G  IVEP DP  +I + +A C++ R
Sbjct: 8   REVLL-EGVEGVRIVEPCDPSGLIAENVAHCILSR 41


>SB_9112| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 171

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +3

Query: 252 KEALLGQAQAGAVIVEPDDPRKVIVKKLALCVVGR 356
           +E LL +   G  IVEP DP  +I + +A C++ R
Sbjct: 32  REVLL-EGVEGVRIVEPCDPSGLIAENVAHCILSR 65


>SB_8350| Best HMM Match : ShTK (HMM E-Value=2.5e-09)
          Length = 1103

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
 Frame = +3

Query: 120 PEVAHTPXXXXXXXXIKSSYKPP----PEKTIEEILAADQEDESLRKY 251
           P   H P           +Y+PP    P  T   + AADQ+DE+L++Y
Sbjct: 285 PPAVHAPYHPPPAYS-NPTYQPPASTYPPPTSTGMAAADQKDETLKRY 331


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,508,274
Number of Sequences: 59808
Number of extensions: 403922
Number of successful extensions: 1021
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 943
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1018
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)