Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1697
         (650 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               27   0.21 
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    23   3.4  
DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.              22   5.9  
DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.              22   5.9  
DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    21   7.8  
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    21   7.8  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 26.6 bits (56), Expect = 0.21
 Identities = 13/57 (22%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = -1

Query: 545 DHMSHLVNWNAQSVGLL-HVLQTVHDLALNDKIDPYSVLYTLLYHEYLLFEVGQVPS 378
           D  S L++     + ++  ++   + L L +  D +  L    Y EY ++E+G++ S
Sbjct: 363 DQHSQLIDTLENVLAIVDRLMDETNQLTLQETADAFKDLQDKYYEEYKMYELGELAS 419


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -1

Query: 602 RILGGRCVRLNLNFGG 555
           RIL G  +RL  NFGG
Sbjct: 43  RILDGYDIRLRPNFGG 58


>DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.
          Length = 135

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 10/29 (34%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
 Frame = +3

Query: 192 EKTIEEI--LAADQEDESLRKYKEALLGQ 272
           ++T+++I  +  D EDE  ++Y E +L Q
Sbjct: 41  QQTVDDINEVNFDVEDEKPQRYNECILKQ 69


>DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.
          Length = 135

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 10/29 (34%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
 Frame = +3

Query: 192 EKTIEEI--LAADQEDESLRKYKEALLGQ 272
           ++T+++I  +  D EDE  ++Y E +L Q
Sbjct: 41  QQTVDDINEVNFDVEDEKPQRYNECILKQ 69


>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +3

Query: 456 IVQREIVHGLKYVQKTYRLGVP 521
           I++   + G  YV+  Y LG+P
Sbjct: 283 IMELHNIEGTHYVKIVYYLGIP 304


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +3

Query: 456 IVQREIVHGLKYVQKTYRLGVP 521
           I++   + G  YV+  Y LG+P
Sbjct: 298 IMELHNIEGTHYVKIVYYLGIP 319


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,790
Number of Sequences: 438
Number of extensions: 3284
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)