Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1693
         (717 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q86QT5 Cluster: Putative uncharacterized protein; n=1; ...    72   2e-11

>UniRef50_Q86QT5 Cluster: Putative uncharacterized protein; n=1;
           Bombyx mori|Rep: Putative uncharacterized protein -
           Bombyx mori (Silk moth)
          Length = 77

 Score = 71.7 bits (168), Expect = 2e-11
 Identities = 34/41 (82%), Positives = 35/41 (85%)
 Frame = +2

Query: 488 LADPADFVVPQSINKRPKLLYKINLTQTKGIRPTGGTHQRK 610
           LADPADFVVPQSINKRPK LYKINL QTKGIR TG T + K
Sbjct: 22  LADPADFVVPQSINKRPKHLYKINLKQTKGIRQTGDTSKEK 62



 Score = 42.3 bits (95), Expect = 0.011
 Identities = 18/20 (90%), Positives = 18/20 (90%)
 Frame = +1

Query: 592 GDTSKEKQNCNFYLIPSIFI 651
           GDTSKEKQNC FYLIP IFI
Sbjct: 56  GDTSKEKQNCYFYLIPRIFI 75


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 672,762,069
Number of Sequences: 1657284
Number of extensions: 13422065
Number of successful extensions: 27003
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 25912
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26988
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 57851245060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)