Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1693
         (717 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyce...    27   2.7  
SPAC3C7.07c |||arginine-tRNA protein transferase |Schizosaccharo...    26   4.7  
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c...    26   6.2  

>SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = +1

Query: 613 QNCNFYLIPSIFIVFYFLNLFWTSTNNL-RPKLAQ 714
           +NCN Y  P +    YF  ++   T  L RPK +Q
Sbjct: 383 ENCNLYFNPEMPTTIYFWKIYSAPTWMLARPKFSQ 417


>SPAC3C7.07c |||arginine-tRNA protein transferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 361

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 8/33 (24%), Positives = 18/33 (54%)
 Frame = +2

Query: 41  IYKHYSTNVKRLVFGRVALCLRVYIEIVRCYRY 139
           +Y  Y  ++ +   GR++ C  +++ +   YRY
Sbjct: 181 VYLFYDPDMSKFSLGRISACREIWLALECGYRY 213


>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 796

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 6/46 (13%)
 Frame = +1

Query: 238 TTASFLAG--LPEPLFLFT----YLIKIPLLFYYGLCTYIIYLHMY 357
           T  SF  G  LP+P+F+      Y I  PL+  +GL  +II   +Y
Sbjct: 625 TPDSFSVGIFLPQPMFIMLICLCYSIISPLILVFGLIYFIIGFLVY 670


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,944,046
Number of Sequences: 5004
Number of extensions: 62090
Number of successful extensions: 136
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)