Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1692
         (699 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI00006CB096 Cluster: hypothetical protein TTHERM_0024...    35   1.7  
UniRef50_UPI00015A6F3C Cluster: Tripartite motif-containing prot...    33   5.1  
UniRef50_A5UTY0 Cluster: Putative uncharacterized protein; n=2; ...    33   6.7  
UniRef50_UPI00006CB9DD Cluster: hypothetical protein TTHERM_0055...    33   8.9  
UniRef50_Q4SFS7 Cluster: Chromosome 7 SCAF14601, whole genome sh...    33   8.9  

>UniRef50_UPI00006CB096 Cluster: hypothetical protein
           TTHERM_00242030; n=1; Tetrahymena thermophila SB210|Rep:
           hypothetical protein TTHERM_00242030 - Tetrahymena
           thermophila SB210
          Length = 449

 Score = 35.1 bits (77), Expect = 1.7
 Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
 Frame = +1

Query: 31  SLLKNLILQYKQ*GHTWQ*CLITYKYIGIIYTLANFPFSTLLYR-RHFELIYSNIEISQH 207
           ++LK+ I QYK+  +  Q   +  +   II  + N   + +LY   HFEL   NIEI   
Sbjct: 240 AILKSYIAQYKKSSYVSQLTFVDKESFSIINNMKNSIVNLILYNTSHFELDKKNIEIIAQ 299

Query: 208 INKTSRNKQQTL 243
           + + ++   Q +
Sbjct: 300 VMRENKRYTQII 311


>UniRef50_UPI00015A6F3C Cluster: Tripartite motif-containing protein
           36 (Zinc-binding protein Rbcc728) (RING finger protein
           98).; n=2; Danio rerio|Rep: Tripartite motif-containing
           protein 36 (Zinc-binding protein Rbcc728) (RING finger
           protein 98). - Danio rerio
          Length = 579

 Score = 33.5 bits (73), Expect = 5.1
 Identities = 15/55 (27%), Positives = 29/55 (52%)
 Frame = +1

Query: 535 PTTTIR*ICLVKPKSQYDKINKYASIQNKHIMNTSKTSRAGSNSRARSLPTAIRI 699
           PTT  R   L+ P+ + +K+N Y  +  + + +  K   + +N R  S+ +A +I
Sbjct: 79  PTTNFRPKVLMCPEHEMEKVNMYCEVCRRPVCHLCKLGGSHANHRVTSMSSAYKI 133


>UniRef50_A5UTY0 Cluster: Putative uncharacterized protein; n=2;
           Roseiflexus|Rep: Putative uncharacterized protein -
           Roseiflexus sp. RS-1
          Length = 163

 Score = 33.1 bits (72), Expect = 6.7
 Identities = 16/36 (44%), Positives = 22/36 (61%)
 Frame = +2

Query: 377 RSQKRHYKFRNKTALQSPVLGPRQRLTRVTFFGTSW 484
           R+  R+Y+F     LQ PV  P +RL RVTF  T++
Sbjct: 95  RATARYYRFAIGPLLQLPVAVPSRRLRRVTFIPTTF 130


>UniRef50_UPI00006CB9DD Cluster: hypothetical protein
           TTHERM_00556700; n=1; Tetrahymena thermophila SB210|Rep:
           hypothetical protein TTHERM_00556700 - Tetrahymena
           thermophila SB210
          Length = 374

 Score = 32.7 bits (71), Expect = 8.9
 Identities = 17/41 (41%), Positives = 22/41 (53%)
 Frame = +1

Query: 316 TKLILTNFIKVQTVDKIK*CQIPKTSLQVQKQDCITISRPR 438
           TKLIL +F+ +Q   KIK  Q   + L     D + I RPR
Sbjct: 167 TKLILFHFVALQKKKKIKNIQSSDSDLDQSHSDSLNIKRPR 207


>UniRef50_Q4SFS7 Cluster: Chromosome 7 SCAF14601, whole genome
           shotgun sequence; n=2; Tetraodontidae|Rep: Chromosome 7
           SCAF14601, whole genome shotgun sequence - Tetraodon
           nigroviridis (Green puffer)
          Length = 153

 Score = 32.7 bits (71), Expect = 8.9
 Identities = 20/80 (25%), Positives = 42/80 (52%), Gaps = 3/80 (3%)
 Frame = +1

Query: 457 ESYFLWDIVAHLIGPAKTQNLILCNTPTTTIR*ICLVKPKSQYDKINKYA---SIQNKHI 627
           +S  ++ ++  L+ PAK + + +C +    +R  CLV+PK   +K+N Y    S  +K I
Sbjct: 3   KSLLVFGVLGVLLIPAKCEKISVCTSDNKDLRVDCLVEPKP--NKVNDYQFSWSSGDKEI 60

Query: 628 MNTSKTSRAGSNSRARSLPT 687
           + ++  S +  +   ++  T
Sbjct: 61  VLSTNVSGSSPDKNLKTQST 80


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 633,724,165
Number of Sequences: 1657284
Number of extensions: 11928182
Number of successful extensions: 28854
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 28013
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28851
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 55371905986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)