Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1692
         (699 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch...    27   2.6  
SPAC9E9.06c |||threonine synthase |Schizosaccharomyces pombe|chr...    27   3.4  
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch...    26   4.5  
SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase ...    25   7.9  

>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 764

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = +1

Query: 565 VKPKSQYDKINKYASIQNKHIMNTSKTSRAGSNS 666
           V PK +  KI K+   +NKH   TS       NS
Sbjct: 595 VSPKGRRKKITKHTKKKNKHASETSVAPEKVDNS 628


>SPAC9E9.06c |||threonine synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 514

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -2

Query: 599 LFILSYCDFGFTRQI*RIVVVGVLHRMRFCVLAG 498
           L + SY D+ F  Q+  I   G+L   R C+ +G
Sbjct: 461 LALSSYSDYNFNTQVLPIEFDGLLDEERTCIFSG 494


>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 219

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = +1

Query: 610 IQNKHIMNTSKTSRAGSNSRARSLPTA 690
           I+NKH  N+SK+SRA  ++ A  + ++
Sbjct: 142 IKNKHGKNSSKSSRAAQSAAAELISSS 168


>SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase
           Cho2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 905

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 14/57 (24%), Positives = 28/57 (49%)
 Frame = -3

Query: 475 PKESNSREPLSRTEDGRL*CSLVSELVMTFLGSDIILFYRLFGL**N*SILILFMDW 305
           PKE  +R  +  T D R   +    +V++ + + ++LF+   G     S+++ F  W
Sbjct: 81  PKEQENRRSILETVDPRFSKTPWDWIVISSILAQVLLFFMTTGAVRRYSMMLCFFFW 137


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,693,066
Number of Sequences: 5004
Number of extensions: 53768
Number of successful extensions: 134
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)