Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1692
         (699 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    23   2.1  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    22   4.9  
DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein ...    22   6.4  
AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein ...    22   6.4  
AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific pro...    22   6.4  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       21   8.5  

>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -2

Query: 335 LVNINFVHGLV*RRMNRSKPR-VGSSYSISALNVC 234
           +VNIN   GL    MNR++P  + S  +++ L  C
Sbjct: 140 IVNINDASGLNLLPMNRNRPAYLASKCALTTLTDC 174


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -3

Query: 400 LVMTFLGSDIILFYRLFG 347
           LVMTF G + +L Y +FG
Sbjct: 77  LVMTFAGVNDLLGYWVFG 94


>DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein 3
           protein.
          Length = 130

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = -2

Query: 641 LDVFIMCLFCIEAYLFILSYCDFGFTRQI*RIVVVGVLHRMR 516
           + V I+CL  + A + + +  D  +T +   I V  +LH  R
Sbjct: 1   MKVSIICLVLMAAIVLVAARPDESYTSKFDNINVDEILHSDR 42


>AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein
           protein.
          Length = 130

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = -2

Query: 641 LDVFIMCLFCIEAYLFILSYCDFGFTRQI*RIVVVGVLHRMR 516
           + V I+CL  + A + + +  D  +T +   I V  +LH  R
Sbjct: 1   MKVSIICLVLMAAIVLVAARPDESYTSKFDNINVDEILHSDR 42


>AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific
           protein 3c precursor protein.
          Length = 130

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = -2

Query: 641 LDVFIMCLFCIEAYLFILSYCDFGFTRQI*RIVVVGVLHRMR 516
           + V I+CL  + A + + +  D  +T +   I V  +LH  R
Sbjct: 1   MKVSIICLVLMAAIVLVAARPDESYTSKFDNINVDEILHSDR 42


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +3

Query: 153 TLPSTLRINLQQH*NLTTY 209
           +LP T+  +L+ H N+T Y
Sbjct: 168 SLPQTIVFHLETHPNVTWY 186


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,430
Number of Sequences: 438
Number of extensions: 3904
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)