Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1691
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar...    32   0.091
SPBC1685.11 |rlp1||RecA family ATPase Rlp1|Schizosaccharomyces p...    29   0.85 
SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|ch...    28   1.5  
SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase Gut2|Schi...    27   3.4  
SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC su...    26   6.0  
SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ...    25   7.9  
SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces ...    25   7.9  

>SPMIT.06 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 807

 Score = 31.9 bits (69), Expect = 0.091
 Identities = 17/43 (39%), Positives = 21/43 (48%)
 Frame = +3

Query: 6   PQGSVLSPLLYNIYTAILDTTVNRFCRILQYADDIALYTISNS 134
           PQGS++SP+L NIY   LD  +        Y   IA    S S
Sbjct: 422 PQGSIVSPILANIYLHQLDEFIENLKSEFDYKGPIARKRTSES 464


>SPBC1685.11 |rlp1||RecA family ATPase Rlp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 363

 Score = 28.7 bits (61), Expect = 0.85
 Identities = 17/67 (25%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
 Frame = -1

Query: 265 SGITLLREKATAEHLGMDRDKQ*SFNQEFRLNKAEFRQ--LQACEKELDMV*R-AISSAY 95
           SG+     ++T + L + ++ +   +++FR NK EF +    A    L  +    +S+ Y
Sbjct: 205 SGVVESIPQSTKDLLRIWKEAKIQMHEDFRCNKTEFNEACFDASSSRLGCILMDGLSTFY 264

Query: 94  WRIRQKR 74
           W++R +R
Sbjct: 265 WQLRLER 271


>SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 923

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -2

Query: 162 NLDNYKLVRKN*IWYRGQYRQHIG 91
           NLD Y+L RK  + Y  ++RQH+G
Sbjct: 45  NLDPYELKRKILLDYFNKWRQHVG 68


>SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase
           Gut2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 649

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = +3

Query: 390 KSINVLRALSGVKWGSHPYSQKLLYNALIRSHFDYGCFVLEPCNKMAL 533
           KS   L  +SG KW ++    +   N LI+ H D+G   L+PC    L
Sbjct: 434 KSDTGLLTISGGKWTTYREMAEETVNELIKDH-DFG-KALKPCQTKKL 479


>SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC
           subunit Psc3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 962

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
 Frame = +3

Query: 30  LLYNIYTAILDTTVNR---FCRILQYADDIALYTISNSFSQACN 152
           +L++ YT+ L   ++    FC++  + + I L  +S S    CN
Sbjct: 536 VLFDNYTSTLKDPIDSILSFCKLNDFQESILLQLLSASIQTVCN 579


>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 625

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 9/30 (30%), Positives = 20/30 (66%)
 Frame = +3

Query: 531 LTKLNRIQSKCLRIISGAMKSSPINALQVE 620
           +TK++R  SKCL+++ G +  +    L+++
Sbjct: 400 ITKVSRAYSKCLKVLLGIIAPNYTRLLELD 429


>SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 878

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 16/52 (30%), Positives = 23/52 (44%)
 Frame = +3

Query: 369 YICNKVEKSINVLRALSGVKWGSHPYSQKLLYNALIRSHFDYGCFVLEPCNK 524
           Y+ +K     NV   +S VK      S   +YN  +  H + G  VL  CN+
Sbjct: 778 YLTSKTVAPENVPAVISIVKSNGGVCSTLNVYNKRLARHLEDGNVVLITCNE 829


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,740,450
Number of Sequences: 5004
Number of extensions: 54287
Number of successful extensions: 129
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)