Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1691
         (700 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0382 + 17470508-17470807,17471449-17474517                       31   1.2  
06_03_0846 - 25328224-25330613,25330716-25330794                       30   1.5  
05_02_0152 + 7126802-7127315,7127451-7129190,7130718-7131778           28   8.2  

>07_03_0382 + 17470508-17470807,17471449-17474517
          Length = 1122

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 14/47 (29%), Positives = 30/47 (63%), Gaps = 6/47 (12%)
 Frame = +3

Query: 255  VIPEINIEICNQSIPVLSKVKFLGILLDSK------LSGVHHLNYIC 377
            V+ E+N++ CN+ + ++S +  L +L   +      +SGVH+L+++C
Sbjct: 899  VLKELNVQACNE-LKIVSNLPLLEVLTIRRCPRLDDVSGVHYLSHVC 944


>06_03_0846 - 25328224-25330613,25330716-25330794
          Length = 822

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = +3

Query: 3   LPQGSVLSPLLYNIYTAILDTTVNRFC 83
           LPQ  VL+P+L NIY    D  V R C
Sbjct: 293 LPQEGVLAPILMNIYLDSFDHEVFRIC 319


>05_02_0152 + 7126802-7127315,7127451-7129190,7130718-7131778
          Length = 1104

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 15/76 (19%), Positives = 40/76 (52%), Gaps = 7/76 (9%)
 Frame = +3

Query: 150 NCLNSALFNLNSWLNDHCLSLSIPKC---SAVAFSRKRVIPE----INIEICNQSIPVLS 308
           NCL+ + + ++  ++D   S+S+ KC     +++  +R +P     +++E+ ++S+    
Sbjct: 490 NCLDQSRYVMHDLIHDMAQSISVDKCFLMQDLSYQNQRRMPHAVRYMSVEVDSESLSQTR 549

Query: 309 KVKFLGILLDSKLSGV 356
            +++L  L   K   +
Sbjct: 550 DIQYLNKLHSLKFGTI 565


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,569,618
Number of Sequences: 37544
Number of extensions: 313235
Number of successful extensions: 641
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 624
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 640
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)