Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1691
         (700 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical ...    77   2e-14
U58738-4|AAB00604.1|  358|Caenorhabditis elegans Hypothetical pr...    61   6e-10
AL132860-6|CAB60526.1|  373|Caenorhabditis elegans Hypothetical ...    44   1e-04
AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical ...    40   0.001
AF043700-1|AAB97571.2|  328|Caenorhabditis elegans Hypothetical ...    40   0.002
AF036692-9|AAB88330.1|  389|Caenorhabditis elegans Hypothetical ...    29   0.28 
U42436-8|AAF99897.3|  950|Caenorhabditis elegans Importin beta f...    31   0.60 
U50072-4|AAA93451.1|  250|Caenorhabditis elegans Cytochrome p450...    28   5.6  
U13019-5|AAC24444.1|  994|Caenorhabditis elegans Hypothetical pr...    28   7.4  

>AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical
            protein R11E3.3 protein.
          Length = 931

 Score = 76.6 bits (180), Expect = 2e-14
 Identities = 55/231 (23%), Positives = 99/231 (42%), Gaps = 3/231 (1%)
 Frame = +3

Query: 3    LPQGSVLSPLLYNIYTAILDTTVNRFCRILQYADDIALYTISNSFSQACNCLNSALFNLN 182
            +PQGSV+SP L+  Y  + D    +   ++ YADD+++        +A   +   +  + 
Sbjct: 533  VPQGSVISPNLFTFY--LKDMPTQQDTMLISYADDMSIIARDKKIEKAAEKVQLHIDEIA 590

Query: 183  SWLNDHCLSLSIPKCSAVAFS--RKRVIPEINIEICNQSIPVLSKVKFLGILLDSKLSGV 356
             +L +  +S+S  K +   FS   K    + +I   +  IPV++  K LGI L++     
Sbjct: 591  KYLKERGMSISAEKSTVTVFSCDPKEHKTKPDIYWMDDPIPVINAPKLLGITLNTMTGTK 650

Query: 357  HHLNYICNKVEKSINVLRALSGVKWGSHPYSQKLLYNALIRSHFDYGCFV-LEPCNKMAL 533
             H+      ++    V+++++G  WG+   +      ALI+    YG        +   L
Sbjct: 651  DHVGNAIKSMQNKTRVIKSMAGTSWGNDRETMLYTTQALIKPTALYGAPAWTSLLSDTNL 710

Query: 534  TKLNRIQSKCLRIISGAMKSSPINALQVECFEPPLALRRQFLTDRFFYKVI 686
             KL       LR   G  K +P + +  EC   PL    +  T + +   I
Sbjct: 711  EKLEIAYRSALRACVGLTKDTPTDHIYQECRVLPLKEEYKLATQQMYLAAI 761


>U58738-4|AAB00604.1|  358|Caenorhabditis elegans Hypothetical
           protein F31A9.6 protein.
          Length = 358

 Score = 61.3 bits (142), Expect = 6e-10
 Identities = 52/190 (27%), Positives = 81/190 (42%), Gaps = 1/190 (0%)
 Frame = +3

Query: 3   LPQGSVLSPLLYNIYTAILDTTVNRFCRILQYADDIALYTISNSFSQACNCLNSALFNLN 182
           +PQG+VLSPLL+ IY   + + +       Q+ADD  LY  S   +++ N L SAL  + 
Sbjct: 77  VPQGAVLSPLLFGIYVNDISSILPEKVACKQFADDTKLYA-STPKTESENNLQSALDAVV 135

Query: 183 SWLNDHCLSLSIPKCSAVAFSRKRVIPEINIEICNQSIPVLSKVKFLGILLDSKLSGVHH 362
            W     L+L+  K   V   ++R+  +    +    I   +  + LG L+  KL    H
Sbjct: 136 DWTKGSKLTLNQSKTVHVTVGKRRI--DFKYHLDGYPIERKAITRDLGFLISEKLDFSDH 193

Query: 363 LNYICNKVEKSI-NVLRALSGVKWGSHPYSQKLLYNALIRSHFDYGCFVLEPCNKMALTK 539
                N  +  + N+    S     S+     LLY   IR   +YG  V  P  K     
Sbjct: 194 WRKCINLAKFQLANMFNKYS----TSNKKLMILLYKTFIRPRLEYGTVVSSPTKKSDEKT 249

Query: 540 LNRIQSKCLR 569
           +  +Q+   R
Sbjct: 250 IESVQNAFTR 259


>AL132860-6|CAB60526.1|  373|Caenorhabditis elegans Hypothetical
           protein Y56A3A.9 protein.
          Length = 373

 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 29/132 (21%), Positives = 56/132 (42%), Gaps = 1/132 (0%)
 Frame = +3

Query: 294 IPVLSKVKFLGILLDSKLSGVHHLNYICNKVEKSINVLRALSGVKWGSHPYSQKLLYNAL 473
           IP  ++ + LG+  DS L    H   I  +++  +N ++ L+G  WGS+       + A+
Sbjct: 65  IPTTNECRLLGLHFDSMLCMREHHAQIKKRLQSQLNQMKGLAGTTWGSNKELMLTTFKAI 124

Query: 474 IRSHFDYGCFVLEPCNK-MALTKLNRIQSKCLRIISGAMKSSPINALQVECFEPPLALRR 650
            +    Y C       K   +  L+      LR+  G  K +P   +  E    PL+ + 
Sbjct: 125 TKPGATYACQSWSQLVKPTRMDSLDSSYRAILRVCCGLTKDTPGYHIHDEAGILPLSHKI 184

Query: 651 QFLTDRFFYKVI 686
           + +  ++   +I
Sbjct: 185 KLMNQQYAISMI 196


>AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical
            protein F21E9.1 protein.
          Length = 1170

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 38/151 (25%), Positives = 71/151 (47%), Gaps = 3/151 (1%)
 Frame = +3

Query: 3    LPQGSVLSPLLYNIYTAILDTTVNRFCRILQYADDIALYTISNSFSQACNCLNSALFNLN 182
            +PQGSV  PLL+ ++   L   +     I  +ADD+ ++    +  Q      +++  + 
Sbjct: 881  VPQGSVSGPLLFILFINNLLIDLAPTINISCFADDVKIFHTDPTIIQ------NSIDIIV 934

Query: 183  SWLNDHCLSLSIPKCSAVAFSRKRVIPEINIEICNQSIPVLSKVKFLGILLDSKLSGVHH 362
            SW   + L L+  K + +A   +      +++     I   S V+ LG++ D KL   HH
Sbjct: 935  SWSKLNELPLAPTKSALLALGTRNKNQSYSVD--GVPITPSSTVRDLGLITDCKLKFEHH 992

Query: 363  LNYI-CNKVEKSINVLRALS--GVKWGSHPY 446
            +  + C  + +S  +L+A S    K+ +H Y
Sbjct: 993  IVKVSCLAMLRSKQILKAFSSNSPKFYAHLY 1023


>AF043700-1|AAB97571.2|  328|Caenorhabditis elegans Hypothetical
           protein K09H9.4 protein.
          Length = 328

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 45/172 (26%), Positives = 67/172 (38%), Gaps = 4/172 (2%)
 Frame = +3

Query: 102 DDIALYTISNSFSQACNCLNSALFNLNSWLNDHCLSLSIPKCSAVAFSRKRVIPEINIEI 281
           DD  LY +S   ++  N L +AL  +  W     L+LS  K   V   R R   +    +
Sbjct: 80  DDTKLY-VSTPKAETENNLQAALDAVVDWTRGAKLTLSQSKTVHVTVGRCR--KDFKYHL 136

Query: 282 CNQSIPVLSKVKFLGILLDSKLSGVHHLNYICNKVEKSINVLRALSGVKWGSHPYSQK-- 455
               I   +  + LG L+  KL    H        +KSIN+ +      +  +  S K  
Sbjct: 137 DGYPIERKTITRDLGFLISEKLDFSEHW-------KKSINLAKFQLANIFNQYSTSNKKL 189

Query: 456 --LLYNALIRSHFDYGCFVLEPCNKMALTKLNRIQSKCLRIISGAMKSSPIN 605
             LLY   IR   +YG  V  P  K     +  +Q+   R +   +K   IN
Sbjct: 190 MILLYKTFIRPRLEYGTVVSSPTKKSDEKAIESVQNAFTRRLYSRIKKRYIN 241


>AF036692-9|AAB88330.1|  389|Caenorhabditis elegans Hypothetical
           protein C44B12.7 protein.
          Length = 389

 Score = 28.7 bits (61), Expect(2) = 0.28
 Identities = 26/100 (26%), Positives = 47/100 (47%), Gaps = 6/100 (6%)
 Frame = +3

Query: 3   LPQGSVLSPLLYNIYTAILDTTVNRFCRILQYADDIALYTISNSFSQACNCLNSALFNLN 182
           +P+GSV  P L+ I+   L  +V        +ADD+ +Y+ S    Q      + +  + 
Sbjct: 57  VPKGSVSGPFLFLIFINSLLLSVPPSISCSAFADDLKVYSHSPPLIQ------TTIDLIT 110

Query: 183 SWLNDHCLSLSIPKC---SAVAFSRKRVI---PEINIEIC 284
           +W  ++ L L++ K    + + FS   V+   P IN  +C
Sbjct: 111 TWSENNKLPLAVHKAALLNKLGFSSNCVLLLAPLINSLVC 150



 Score = 22.6 bits (46), Expect(2) = 0.28
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +3

Query: 261 PEINIEICNQSIPVLSKVKFLGILLDSKLSGVHHLNYI 374
           P+   +I N  I   +  + LGIL DSKL+   H+  I
Sbjct: 178 PKTVYKINNLPISPSNIARDLGILTDSKLTFKPHIKKI 215


>U42436-8|AAF99897.3|  950|Caenorhabditis elegans Importin beta family
            protein 6 protein.
          Length = 950

 Score = 31.5 bits (68), Expect = 0.60
 Identities = 29/124 (23%), Positives = 60/124 (48%), Gaps = 7/124 (5%)
 Frame = +3

Query: 87   ILQYADDIALYT--ISNSFS-----QACNCLNSALFNLNSWLNDHCLSLSIPKCSAVAFS 245
            ILQ+  +I  Y+  +S +F+     +ACNC++  L  +  +L     +LS P+ + +  S
Sbjct: 648  ILQFMSNIIGYSSRMSKAFNNAQSMKACNCIDIYLRLIKLYLE----TLS-PQNAFLLES 702

Query: 246  RKRVIPEINIEICNQSIPVLSKVKFLGILLDSKLSGVHHLNYICNKVEKSINVLRALSGV 425
             ++    + + + N+ +P ++ +     L+ + L  +HHL   C++           SGV
Sbjct: 703  TRQFAHRLVVSMENELMPYMNGIFDKLALVSTDLDSMHHLLIFCHQTVAKYKKAMLTSGV 762

Query: 426  KWGS 437
              G+
Sbjct: 763  DLGN 766


>U50072-4|AAA93451.1|  250|Caenorhabditis elegans Cytochrome p450
           family protein 25A6 protein.
          Length = 250

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
 Frame = +3

Query: 327 ILLDSKLSGVHHLNYICNKVEKSINVLR--ALSGVKWGSHPYSQKLLYNALIRSHFDYGC 500
           I    K+  +H    I +KV+  + +L+  A SG KW  +   QKLL ++ I    D+  
Sbjct: 144 IFSTGKMKAMHET--IHSKVDLFLEILKEKASSGQKWDIYELVQKLLNDSDIYYFSDFQG 201

Query: 501 FVLEPCNKMALTKLNRIQSKCLR 569
             L+   K A      I S C R
Sbjct: 202 LTLDVIGKCAFA----IDSNCQR 220


>U13019-5|AAC24444.1|  994|Caenorhabditis elegans Hypothetical
           protein T12A2.5 protein.
          Length = 994

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +3

Query: 6   PQGSVLSPLLYNIYTAILDTTVNRFCRILQYADDIALYTISNSFSQ 143
           P   VL P L  I + ILD  +N    +     DI +  ++N+F++
Sbjct: 10  PDALVLQPWLIKIISTILDDFLNTTRNVAFSIRDIGISMVANNFTR 55


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,895,367
Number of Sequences: 27780
Number of extensions: 297492
Number of successful extensions: 681
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 678
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)