Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1691
         (700 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    25   0.91 
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    25   0.91 
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   2.8  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    23   3.7  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           23   3.7  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   4.9  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   8.5  

>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 24.6 bits (51), Expect = 0.91
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +3

Query: 129 NSFSQACNCLNSALFNLNSW 188
           N+ S  CN  N  LF L +W
Sbjct: 229 NAVSHICNATNKQLFQLVAW 248


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 24.6 bits (51), Expect = 0.91
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +3

Query: 129 NSFSQACNCLNSALFNLNSW 188
           N+ S  CN  N  LF L +W
Sbjct: 229 NAVSHICNATNKQLFQLVAW 248


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
 Frame = +1

Query: 193 MITAY--PCPSLNVLRLLSPVRE 255
           MI  Y  P P +N   +LSPVRE
Sbjct: 790 MIPVYCVPVPQVNDSTILSPVRE 812


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = +2

Query: 53  YFRYYCEPFLPYPPI 97
           + R+Y  PF P+ P+
Sbjct: 288 FMRFYYNPFTPFGPV 302


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = +2

Query: 53  YFRYYCEPFLPYPPI 97
           + R+Y  PF P+ P+
Sbjct: 288 FMRFYYNPFTPFGPV 302


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +3

Query: 630 PPLALRRQFLTDRFFY 677
           PPL+L  Q L   FFY
Sbjct: 299 PPLSLHGQLLWREFFY 314


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 6/11 (54%), Positives = 7/11 (63%)
 Frame = +2

Query: 68  CEPFLPYPPIC 100
           C PF  Y P+C
Sbjct: 149 CVPFTTYTPVC 159


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,837
Number of Sequences: 438
Number of extensions: 4102
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)