Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1689
(568 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0319 - 16712572-16712654,16712756-16712797,16713955-167142... 233 5e-62
03_01_0276 + 2124538-2124550,2124678-2124962,2126813-2126854,212... 233 5e-62
02_05_1201 + 34929577-34929589,34930252-34930587,34931378-349314... 233 5e-62
12_02_1115 - 26173351-26173725,26174241-26174344,26174812-26174845 66 2e-11
03_05_0291 - 22837412-22838128 29 2.0
11_06_0432 + 23448482-23448570,23448987-23449100,23449514-234495... 29 2.6
03_06_0296 + 32901696-32901892,32901989-32902232,32903992-329041... 29 3.4
02_02_0500 - 10993675-10994067,10994434-10995738 29 3.4
06_03_0458 - 20995834-20996004,20996404-20997309,20997778-209979... 28 4.5
01_07_0090 - 41003888-41004716,41005142-41005559,41007010-41007193 28 4.5
06_03_0025 - 15577231-15577420,15577682-15577813,15578025-155781... 28 6.0
11_06_0538 + 24759030-24759379,24759380-24759488,24759604-247596... 27 7.9
08_02_1367 + 26432425-26432622,26434071-26434162,26434337-264344... 27 7.9
06_01_0221 + 1690978-1692171,1692265-1692276 27 7.9
02_04_0663 + 24820745-24821065,24821415-24821861,24821949-248223... 27 7.9
>10_08_0319 -
16712572-16712654,16712756-16712797,16713955-16714239,
16714346-16714358
Length = 140
Score = 233 bits (571), Expect = 5e-62
Identities = 104/127 (81%), Positives = 120/127 (94%)
Frame = +1
Query: 1 GRGGSAGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVAT 180
GRGGSAG KFR+SLGLPV A +NCADNTGAKNLY+I+V+GIKGRLNRLP+A GDM++AT
Sbjct: 5 GRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMAT 64
Query: 181 VKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAKE 360
VKKGKP+LRKKVMPAV++RQRKP+RR+DGV++YFEDNAGVIVN KGEMKGSAITGP+ KE
Sbjct: 65 VKKGKPDLRKKVMPAVIVRQRKPWRRKDGVYMYFEDNAGVIVNPKGEMKGSAITGPIGKE 124
Query: 361 CADLWPR 381
CADLWPR
Sbjct: 125 CADLWPR 131
>03_01_0276 +
2124538-2124550,2124678-2124962,2126813-2126854,
2126943-2127025
Length = 140
Score = 233 bits (571), Expect = 5e-62
Identities = 104/127 (81%), Positives = 120/127 (94%)
Frame = +1
Query: 1 GRGGSAGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVAT 180
GRGGSAG KFR+SLGLPV A +NCADNTGAKNLY+I+V+GIKGRLNRLP+A GDM++AT
Sbjct: 5 GRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMAT 64
Query: 181 VKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAKE 360
VKKGKP+LRKKVMPAV++RQRKP+RR+DGV++YFEDNAGVIVN KGEMKGSAITGP+ KE
Sbjct: 65 VKKGKPDLRKKVMPAVIVRQRKPWRRKDGVYMYFEDNAGVIVNPKGEMKGSAITGPIGKE 124
Query: 361 CADLWPR 381
CADLWPR
Sbjct: 125 CADLWPR 131
>02_05_1201 +
34929577-34929589,34930252-34930587,34931378-34931419,
34931630-34931712
Length = 157
Score = 233 bits (571), Expect = 5e-62
Identities = 104/127 (81%), Positives = 120/127 (94%)
Frame = +1
Query: 1 GRGGSAGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVAT 180
GRGGSAG KFR+SLGLPV A +NCADNTGAKNLY+I+V+GIKGRLNRLP+A GDM++AT
Sbjct: 22 GRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMAT 81
Query: 181 VKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAKE 360
VKKGKP+LRKKVMPAV++RQRKP+RR+DGV++YFEDNAGVIVN KGEMKGSAITGP+ KE
Sbjct: 82 VKKGKPDLRKKVMPAVIVRQRKPWRRKDGVYMYFEDNAGVIVNPKGEMKGSAITGPIGKE 141
Query: 361 CADLWPR 381
CADLWPR
Sbjct: 142 CADLWPR 148
>12_02_1115 - 26173351-26173725,26174241-26174344,26174812-26174845
Length = 170
Score = 66.1 bits (154), Expect = 2e-11
Identities = 40/102 (39%), Positives = 59/102 (57%), Gaps = 3/102 (2%)
Frame = +1
Query: 64 INCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKPELRKK---VMPAVVI 234
+ DN+GAK V+ +Q ++G+ A GD I+ +VK+ +P + K V+ VV+
Sbjct: 58 LKVVDNSGAKR--VMCIQSLRGK----KGARLGDTIIGSVKEAQPRGKVKKGDVVYGVVV 111
Query: 235 RQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAKE 360
R R DG I F+DNA V+VNNKGE+ G+ + GPV E
Sbjct: 112 RAAMKRGRNDGSEIQFDDNAIVLVNNKGELIGTRVFGPVPHE 153
>03_05_0291 - 22837412-22838128
Length = 238
Score = 29.5 bits (63), Expect = 2.0
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = -3
Query: 395 AFEAIRGHRSAHSLATGPVMAEPFI--SPLLLTMTPALSS 282
+++A+ GH+++H T P MA + P T +PA SS
Sbjct: 100 SYQALGGHKTSHRPRTPPTMAAVVVVDEPAATTASPAASS 139
>11_06_0432 +
23448482-23448570,23448987-23449100,23449514-23449580,
23449614-23449741,23452786-23453071,23453264-23453414,
23453603-23453799
Length = 343
Score = 29.1 bits (62), Expect = 2.6
Identities = 14/23 (60%), Positives = 16/23 (69%)
Frame = +2
Query: 437 VLLSFPSTSKSNPKNYNLRNRHL 505
VLLSFPS K +P+N NL R L
Sbjct: 261 VLLSFPSEIKVHPENLNLAARSL 283
>03_06_0296 +
32901696-32901892,32901989-32902232,32903992-32904112,
32904219-32904406
Length = 249
Score = 28.7 bits (61), Expect = 3.4
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = -2
Query: 300 DTRIVLKVYKYSITPSERFPLPDDHCRHYLFPEFRFTLFDCGHNHV 163
+ I+++ Y+ T +R P P D + +F F L+DC +N V
Sbjct: 101 EINIIIEAYR---TLRDRGPYPADQVVRDINGKFAFVLYDCSNNSV 143
>02_02_0500 - 10993675-10994067,10994434-10995738
Length = 565
Score = 28.7 bits (61), Expect = 3.4
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Frame = -3
Query: 344 PVMAEPFISPLLLTMTPALSSKYINTPSRLLNGFRCLMTT---AGITFFR-SSGLPFLTV 177
P EP I+ + ++PA+ +T S + NG+ +M+T G+ F + SSG + V
Sbjct: 225 PAPVEPIIANGKVKLSPAVMEMIYSTISGIENGYLPVMSTEGSGGVYFMKDSSGESNVAV 284
Query: 176 ATIMSPEPAA 147
+ EP A
Sbjct: 285 FKPIDEEPMA 294
>06_03_0458 -
20995834-20996004,20996404-20997309,20997778-20997942,
20998024-20998353,20998471-20998527,20998579-20998692,
20999220-20999381,20999465-20999527,21001100-21001207,
21001598-21001675,21001771-21001902
Length = 761
Score = 28.3 bits (60), Expect = 4.5
Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Frame = +1
Query: 283 EDNAGVIV--NNKGEMKGSAITGPVAKECAD 369
ED +I+ N+KG +GS ITG + + CA+
Sbjct: 715 EDGDKIIMSSNDKGSNQGSFITGKIVESCAE 745
>01_07_0090 - 41003888-41004716,41005142-41005559,41007010-41007193
Length = 476
Score = 28.3 bits (60), Expect = 4.5
Identities = 17/49 (34%), Positives = 21/49 (42%)
Frame = +1
Query: 10 GSAGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAG 156
GSA A + L A + +TG GI G L+RLPA G
Sbjct: 327 GSAAAIMSATALLQKAAELGATTSTGCYGGVAFPAMGIAGGLDRLPAIG 375
>06_03_0025 -
15577231-15577420,15577682-15577813,15578025-15578173,
15579012-15579071,15593208-15593297,15593604-15593871,
15594517-15594608,15595355-15595441,15597333-15597440,
15597709-15597822,15598253-15598420,15599442-15599579,
15599699-15599908,15600986-15601237,15601965-15602111,
15603327-15603443
Length = 773
Score = 27.9 bits (59), Expect = 6.0
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = -2
Query: 255 SERFPLPDDHCRHYLFPEFRFTLFDCGHNHVPGTGRRQS 139
S R PLP+D C Y+ ++R + H+ G R S
Sbjct: 25 SSRVPLPEDTCDSYVEQKYRCYIRTLKGCHISGRNRLDS 63
>11_06_0538 +
24759030-24759379,24759380-24759488,24759604-24759692,
24760179-24760287,24760370-24760471,24760564-24760628,
24760830-24760936,24761023-24761087,24761163-24761217,
24761305-24761465
Length = 403
Score = 27.5 bits (58), Expect = 7.9
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Frame = -3
Query: 311 LLTMTPALSSKY-INTPSRLLNGFRCLMTT--AGITFFRSSGLPFLTVATIMSPEPAAGS 141
LLT P + + SRL R L AG+ FF S+ + + I+ P P++
Sbjct: 37 LLTQRPCVEGTMTMGEQSRLPESLRLLDAAFDAGVNFFDSAEMYYYAPLLILPPPPSSFP 96
Query: 140 LFR 132
LF+
Sbjct: 97 LFQ 99
>08_02_1367 +
26432425-26432622,26434071-26434162,26434337-26434403,
26434519-26434638,26434792-26435023,26435525-26435606,
26435985-26436117,26436332-26436537,26436633-26436758,
26437208-26437907
Length = 651
Score = 27.5 bits (58), Expect = 7.9
Identities = 14/51 (27%), Positives = 23/51 (45%)
Frame = -2
Query: 201 FRFTLFDCGHNHVPGTGRRQSVQATFDTLDCDHIQILCPCVVGAVDYCSHW 49
FRF + D H+ GT + + ++ T+D H L + Y S+W
Sbjct: 455 FRFCIADSEHDWREGTDQYKFIEQCLSTVDRKHQPWLIFAAHRVLGYSSNW 505
>06_01_0221 + 1690978-1692171,1692265-1692276
Length = 401
Score = 27.5 bits (58), Expect = 7.9
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = -3
Query: 182 TVATIMSPEPAAGSLFRRPLIPWTAITYRFFAPVLSAQLITA 57
++A + S P + + FRR L+P+ A F A S LI A
Sbjct: 160 SLAVLSSSFPPSSAAFRRELLPYMAPLLAFLAKTGSPFLINA 201
>02_04_0663 +
24820745-24821065,24821415-24821861,24821949-24822317,
24822324-24822835,24822914-24823084,24823284-24823434,
24823664-24823702
Length = 669
Score = 27.5 bits (58), Expect = 7.9
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -3
Query: 80 LSAQLITAPTGRPREIRNFAPAEPP 6
++A+ TAP GRP + FAP+ PP
Sbjct: 345 VTARPTTAPGGRPPKRPAFAPSAPP 369
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,010,013
Number of Sequences: 37544
Number of extensions: 336203
Number of successful extensions: 1114
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1082
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1114
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1305140760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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