Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1689
         (568 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    27   0.099
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    27   0.17 
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        25   0.70 
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        25   0.70 
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        25   0.70 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   3.7  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   3.7  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   8.6  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   8.6  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 27.5 bits (58), Expect = 0.099
 Identities = 12/55 (21%), Positives = 21/55 (38%)
 Frame = -2

Query: 231 DHCRHYLFPEFRFTLFDCGHNHVPGTGRRQSVQATFDTLDCDHIQILCPCVVGAV 67
           D C  Y +    +T  DCG    P   +R   Q   + +  +    + P V+  +
Sbjct: 471 DQCEEYEYVHDEYTCMDCGPGKWPHEDKRGCYQLAINHIRWNSAFAIAPAVISCL 525


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 26.6 bits (56), Expect = 0.17
 Identities = 12/55 (21%), Positives = 21/55 (38%)
 Frame = -2

Query: 231 DHCRHYLFPEFRFTLFDCGHNHVPGTGRRQSVQATFDTLDCDHIQILCPCVVGAV 67
           D C  Y +    +T  DCG    P   +R   Q   + +  +    + P V+  +
Sbjct: 561 DQCEEYEYVYDEYTCMDCGPGKWPHEDKRGCYQLAINHIRWNSAFAIAPAVISCL 615


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 24.6 bits (51), Expect = 0.70
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = +3

Query: 387 LKRELYSLNIRLRLVAAFYFPFLVHQNQTRKIIICVIDIYN 509
           L+  +++L + +  V +F F      +  R   ICV +IY+
Sbjct: 3   LRCNIWTLAVNVLFVNSFLFVIAAQDSSGRIFTICVPEIYS 43


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 24.6 bits (51), Expect = 0.70
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = +3

Query: 387 LKRELYSLNIRLRLVAAFYFPFLVHQNQTRKIIICVIDIYN 509
           L+  +++L + +  V +F F      +  R   ICV +IY+
Sbjct: 3   LRCNIWTLAVNVLFVNSFLFVIAAQDSSGRIFTICVPEIYS 43


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 24.6 bits (51), Expect = 0.70
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = +3

Query: 387 LKRELYSLNIRLRLVAAFYFPFLVHQNQTRKIIICVIDIYN 509
           L+  +++L + +  V +F F      +  R   ICV +IY+
Sbjct: 3   LRCNIWTLAVNVLFVNSFLFVIAAQDSSGRIFTICVPEIYS 43


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
 Frame = +3

Query: 42   GSPSGS-SNQLRRQHRGKESVCDRSPRYQRSPEQTAG 149
            G P G  +N       G +S+  ++ RY R P Q  G
Sbjct: 1760 GPPVGHPTNASAHSRSGSQSMPRQNGRYSRVPSQGGG 1796


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 10/35 (28%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = +2

Query: 155 VPGT*LWPQSKRVNLNSGKR--*CRQWSSGSGNRS 253
           +P T LW ++ R+ +++ K+    + WS  S N +
Sbjct: 439 IPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNA 473


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = +2

Query: 413 YTFKISSCVLLSFPSTSKSNPKNYNLRNRHLQCKCA 520
           YT  +++ ++L  P T  +   +  LRN      CA
Sbjct: 654 YTANLAAFLVLERPKTKLTGINDARLRNTMENLTCA 689


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -3

Query: 209  FRSSGLPFLTVATIMSPEPAAGSLFRRPLIP 117
            F  S +PF++   I++  P +     RP+IP
Sbjct: 1034 FHYSVVPFVSNHDILNLRPLSMEKGTRPMIP 1064


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,125
Number of Sequences: 438
Number of extensions: 3385
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16440594
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)