Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1687
         (317 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC24B10.17 |emp24||COPII-coated vesicle component Emp24 |Schiz...    25   2.1  
SPAC1786.03 |cut11|SPAC24C9.01|integral membrane nucleoporin|Sch...    25   3.7  
SPCC1620.07c |||lunapark homolog|Schizosaccharomyces pombe|chr 3...    24   6.4  
SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr ...    24   6.4  

>SPCC24B10.17 |emp24||COPII-coated vesicle component Emp24
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 199

 Score = 25.4 bits (53), Expect = 2.1
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +1

Query: 43  NKKKCKYYNLMNKDTISFKYET 108
           ++++C Y NL N D +S  Y+T
Sbjct: 29  HQRECFYENLRNNDQMSVTYQT 50


>SPAC1786.03 |cut11|SPAC24C9.01|integral membrane
           nucleoporin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 24.6 bits (51), Expect = 3.7
 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = -1

Query: 194 HGFWPR-FYNNFVVFRYSISFLCFFLIYFHVS 102
           + F P+ F+  ++ F  S+S LC F I  H S
Sbjct: 101 YDFSPKSFFLVYLTFAVSVSCLCLFYIKGHAS 132


>SPCC1620.07c |||lunapark homolog|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 334

 Score = 23.8 bits (49), Expect = 6.4
 Identities = 10/30 (33%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +3

Query: 171 IKPRPKSVAT-EHCDMNSAEQKGPNILQRP 257
           ++  P S++  +  + N+  QKGPNI+  P
Sbjct: 248 LQTNPSSISKGKKNNSNNTTQKGPNIISSP 277


>SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 791

 Score = 23.8 bits (49), Expect = 6.4
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +3

Query: 234 GPNILQRPIFSSKPRGGA 287
           GPN LQ+ I +S+P G +
Sbjct: 543 GPNSLQQTIANSRPEGNS 560


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,287,913
Number of Sequences: 5004
Number of extensions: 22564
Number of successful extensions: 53
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 85983492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)