Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1687
         (317 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0039 - 10024789-10025223                                         29   0.60 
10_08_0732 - 20173816-20174137,20175824-20176023,20176099-20176998     26   5.6  
07_01_0751 - 5777017-5778032,5779718-5780111,5780830-5781936           26   7.4  

>04_03_0039 - 10024789-10025223
          Length = 144

 Score = 29.5 bits (63), Expect = 0.60
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 4/37 (10%)
 Frame = +3

Query: 207 CDMNSAEQKGPNILQRPIFSSKPR----GGARYPIRP 305
           C  NS  QKGPN++   + +  PR    GGA++P RP
Sbjct: 12  CHNNS--QKGPNLISGDLATEGPRVAGIGGAKWPRRP 46


>10_08_0732 - 20173816-20174137,20175824-20176023,20176099-20176998
          Length = 473

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 11/43 (25%), Positives = 20/43 (46%)
 Frame = -1

Query: 230 LFRTVHIAVFRRHGFWPRFYNNFVVFRYSISFLCFFLIYFHVS 102
           L RTV I + + H  W   +  F ++R     +  F  + H++
Sbjct: 341 LSRTVSIVLCKHHRLWELAFRVFTLYRVRTYLMDGFFCHTHIA 383


>07_01_0751 - 5777017-5778032,5779718-5780111,5780830-5781936
          Length = 838

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = -1

Query: 257 WTL*NVRALLFRTVHIAVFRRHGFWPRFYNN 165
           W L   + +    +   V+RRH FW RF+ +
Sbjct: 464 WLLPETKGVPIDEMVDTVWRRHWFWKRFFTD 494


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,555,255
Number of Sequences: 37544
Number of extensions: 144704
Number of successful extensions: 293
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 289
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 293
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 398975940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)