Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1687
         (317 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    22   1.6  
DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor p...    22   1.6  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    22   1.6  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   2.7  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   3.6  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   3.6  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    20   6.3  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    20   8.3  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    20   8.3  

>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 22.2 bits (45), Expect = 1.6
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -3

Query: 222 HCSYRSVPSPRI 187
           HCS+  +P+PRI
Sbjct: 42  HCSHLCLPAPRI 53


>DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor
           protein.
          Length = 128

 Score = 22.2 bits (45), Expect = 1.6
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -3

Query: 222 HCSYRSVPSPRI 187
           HCS+  +P+PRI
Sbjct: 42  HCSHLCLPAPRI 53


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 22.2 bits (45), Expect = 1.6
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +1

Query: 43  NKKKCKYYNLMNKDTISFKY 102
           NK++C YY  +N   I + Y
Sbjct: 38  NKEECDYYQNLNLGEIYYIY 57


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.4 bits (43), Expect = 2.7
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -2

Query: 220 LFISQCSVATDFGLGFIIISLYFV 149
           LF+    V    GLG++++ LY +
Sbjct: 120 LFLKSTEVTPRDGLGWLLLMLYLL 143


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.0 bits (42), Expect = 3.6
 Identities = 9/35 (25%), Positives = 18/35 (51%), Gaps = 4/35 (11%)
 Frame = -1

Query: 194 HGFWPRFYNNFVVFRYSISFLCF----FLIYFHVS 102
           +G  P   + +    + + F+CF    ++IY H+S
Sbjct: 397 YGMTPSDIDKYSRIVFPVCFVCFNLMYWIIYLHIS 431


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.0 bits (42), Expect = 3.6
 Identities = 9/35 (25%), Positives = 18/35 (51%), Gaps = 4/35 (11%)
 Frame = -1

Query: 194 HGFWPRFYNNFVVFRYSISFLCF----FLIYFHVS 102
           +G  P   + +    + + F+CF    ++IY H+S
Sbjct: 397 YGMTPSDIDKYSRIVFPVCFVCFNLMYWIIYLHIS 431


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 20.2 bits (40), Expect = 6.3
 Identities = 7/28 (25%), Positives = 15/28 (53%)
 Frame = -1

Query: 194 HGFWPRFYNNFVVFRYSISFLCFFLIYF 111
           +G  P   + +    + + F+CF L+Y+
Sbjct: 335 YGMTPSDIDKYSRIVFPVCFVCFNLMYW 362


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 19.8 bits (39), Expect = 8.3
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = -3

Query: 222 HCSYRSVPSPRIL 184
           HC  + VP+P I+
Sbjct: 730 HCQAQGVPTPTIV 742


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 19.8 bits (39), Expect = 8.3
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = -3

Query: 222 HCSYRSVPSPRIL 184
           HC  + VP+P I+
Sbjct: 726 HCQAQGVPTPTIV 738


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,157
Number of Sequences: 438
Number of extensions: 1955
Number of successful extensions: 18
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6844365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)