Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1686
(671 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68752-2|CAE54904.1| 912|Caenorhabditis elegans Hypothetical pr... 37 0.011
Z68752-3|CAE54905.1| 888|Caenorhabditis elegans Hypothetical pr... 32 0.43
Z68752-1|CAA92981.1| 928|Caenorhabditis elegans Hypothetical pr... 32 0.43
AF022976-8|AAC69087.2| 366|Caenorhabditis elegans Serpentine re... 28 5.3
AC024839-8|AAF60825.1| 383|Caenorhabditis elegans Hypothetical ... 28 6.9
AC024839-7|AAF60827.1| 383|Caenorhabditis elegans Hypothetical ... 28 6.9
Z82075-3|CAB04929.2| 784|Caenorhabditis elegans Hypothetical pr... 27 9.2
Z49913-6|CAA90145.2| 460|Caenorhabditis elegans Hypothetical pr... 27 9.2
U13643-5|AAA21081.1| 89|Caenorhabditis elegans Hypothetical pr... 27 9.2
L15347-1|AAA28142.1| 813|Caenorhabditis elegans raf proto-oncog... 27 9.2
AY493414-1|AAR86713.1| 769|Caenorhabditis elegans LIN-45 isofor... 27 9.2
AY493413-1|AAR86712.1| 813|Caenorhabditis elegans LIN-45 isofor... 27 9.2
AY455928-1|AAR26307.1| 813|Caenorhabditis elegans LIN-45 protein. 27 9.2
AF293972-1|AAG02478.1| 784|Caenorhabditis elegans auxilin protein. 27 9.2
AC024204-7|AAM97982.1| 614|Caenorhabditis elegans Abnormal cell... 27 9.2
AC024204-6|AAF36042.1| 813|Caenorhabditis elegans Abnormal cell... 27 9.2
>Z68752-2|CAE54904.1| 912|Caenorhabditis elegans Hypothetical
protein T12G3.2b protein.
Length = 912
Score = 37.1 bits (82), Expect = 0.011
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = -1
Query: 269 NQRRRSVINKTSNVYRHHHHVIISPQSQSTSLNPVFDSPYPFLASRSSSHH 117
+Q + I KTS++Y HH+ ++P + ++ P SP P RS S H
Sbjct: 811 DQYQPGPIRKTSSIYDSSHHIPLAPAPIARNMGPTMISPPPAKLVRSDSDH 861
>Z68752-3|CAE54905.1| 888|Caenorhabditis elegans Hypothetical
protein T12G3.2c protein.
Length = 888
Score = 31.9 bits (69), Expect = 0.43
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = -1
Query: 269 NQRRRSVINKTSNVYRHHHHVIISPQSQSTSLNPVFDSPYP 147
+Q + I KTS++Y HH+ ++P + ++ P SP P
Sbjct: 811 DQYQPGPIRKTSSIYDSSHHIPLAPAPIARNMGPTMISPPP 851
>Z68752-1|CAA92981.1| 928|Caenorhabditis elegans Hypothetical
protein T12G3.2a protein.
Length = 928
Score = 31.9 bits (69), Expect = 0.43
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = -1
Query: 269 NQRRRSVINKTSNVYRHHHHVIISPQSQSTSLNPVFDSPYP 147
+Q + I KTS++Y HH+ ++P + ++ P SP P
Sbjct: 811 DQYQPGPIRKTSSIYDSSHHIPLAPAPIARNMGPTMISPPP 851
>AF022976-8|AAC69087.2| 366|Caenorhabditis elegans Serpentine
receptor, class w protein107 protein.
Length = 366
Score = 28.3 bits (60), Expect = 5.3
Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
Frame = +1
Query: 52 IVNV*YPVCIL---YEK*YIDLVAWWCDE 129
+V++ YP CI Y K Y D+++WW +
Sbjct: 81 LVDLEYPECITSDSYLKMYFDIISWWLQD 109
>AC024839-8|AAF60825.1| 383|Caenorhabditis elegans Hypothetical
protein Y59E9AR.8 protein.
Length = 383
Score = 27.9 bits (59), Expect = 6.9
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = -1
Query: 263 RRRSVINKTSNVYRHHHHVIISPQSQSTSLNPVFDSPYPF 144
R R + T+ YR+ I + Q QSTS+ V+ SPY F
Sbjct: 254 RARELNTSTNPNYRN----IFNNQKQSTSMGRVYQSPYHF 289
>AC024839-7|AAF60827.1| 383|Caenorhabditis elegans Hypothetical
protein Y59E9AR.2 protein.
Length = 383
Score = 27.9 bits (59), Expect = 6.9
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = -1
Query: 263 RRRSVINKTSNVYRHHHHVIISPQSQSTSLNPVFDSPYPF 144
R R + T+ YR+ I + Q QSTS+ V+ SPY F
Sbjct: 254 RARELNTSTNPNYRN----IFNNQKQSTSMGRVYQSPYHF 289
>Z82075-3|CAB04929.2| 784|Caenorhabditis elegans Hypothetical
protein W07A8.3 protein.
Length = 784
Score = 27.5 bits (58), Expect = 9.2
Identities = 11/45 (24%), Positives = 25/45 (55%)
Frame = -1
Query: 383 RNNTYIENYLLTSLKNKFKINNVIYNQLIQSL*YLCKFNQRRRSV 249
R + + ++ SL N+F V Y+ ++ ++CK++ RR+ +
Sbjct: 182 RTISRVSEFMSDSLPNRFDRLPVTYHLFLEQTKHVCKYHARRQQL 226
>Z49913-6|CAA90145.2| 460|Caenorhabditis elegans Hypothetical
protein ZK938.6 protein.
Length = 460
Score = 27.5 bits (58), Expect = 9.2
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +1
Query: 454 NSYVLLVAPSLELYDQIIRNIFLL*KYVLCK 546
NSY+ V P LY RN+ + KY +CK
Sbjct: 289 NSYLYQVGPDSPLYGGGSRNVDEIMKYYICK 319
>U13643-5|AAA21081.1| 89|Caenorhabditis elegans Hypothetical
protein T07E3.2 protein.
Length = 89
Score = 27.5 bits (58), Expect = 9.2
Identities = 11/14 (78%), Positives = 12/14 (85%)
Frame = +3
Query: 357 IIFNICIITFSFFL 398
IIFN CIITFS +L
Sbjct: 8 IIFNFCIITFSVYL 21
>L15347-1|AAA28142.1| 813|Caenorhabditis elegans raf proto-oncogene
protein.
Length = 813
Score = 27.5 bits (58), Expect = 9.2
Identities = 17/42 (40%), Positives = 25/42 (59%)
Frame = -1
Query: 248 INKTSNVYRHHHHVIISPQSQSTSLNPVFDSPYPFLASRSSS 123
I +T V RH + +SPQ++++ L+P PYP RSSS
Sbjct: 277 IKRTGGVKRHP--MAVSPQNETSQLSP--SGPYP--RDRSSS 312
>AY493414-1|AAR86713.1| 769|Caenorhabditis elegans LIN-45 isoform 3
protein.
Length = 769
Score = 27.5 bits (58), Expect = 9.2
Identities = 17/42 (40%), Positives = 25/42 (59%)
Frame = -1
Query: 248 INKTSNVYRHHHHVIISPQSQSTSLNPVFDSPYPFLASRSSS 123
I +T V RH + +SPQ++++ L+P PYP RSSS
Sbjct: 233 IKRTGGVKRHP--MAVSPQNETSQLSP--SGPYP--RDRSSS 268
>AY493413-1|AAR86712.1| 813|Caenorhabditis elegans LIN-45 isoform 2
protein.
Length = 813
Score = 27.5 bits (58), Expect = 9.2
Identities = 17/42 (40%), Positives = 25/42 (59%)
Frame = -1
Query: 248 INKTSNVYRHHHHVIISPQSQSTSLNPVFDSPYPFLASRSSS 123
I +T V RH + +SPQ++++ L+P PYP RSSS
Sbjct: 277 IKRTGGVKRHP--MAVSPQNETSQLSP--SGPYP--RDRSSS 312
>AY455928-1|AAR26307.1| 813|Caenorhabditis elegans LIN-45 protein.
Length = 813
Score = 27.5 bits (58), Expect = 9.2
Identities = 17/42 (40%), Positives = 25/42 (59%)
Frame = -1
Query: 248 INKTSNVYRHHHHVIISPQSQSTSLNPVFDSPYPFLASRSSS 123
I +T V RH + +SPQ++++ L+P PYP RSSS
Sbjct: 277 IKRTGGVKRHP--MAVSPQNETSQLSP--SGPYP--RDRSSS 312
>AF293972-1|AAG02478.1| 784|Caenorhabditis elegans auxilin protein.
Length = 784
Score = 27.5 bits (58), Expect = 9.2
Identities = 11/45 (24%), Positives = 25/45 (55%)
Frame = -1
Query: 383 RNNTYIENYLLTSLKNKFKINNVIYNQLIQSL*YLCKFNQRRRSV 249
R + + ++ SL N+F V Y+ ++ ++CK++ RR+ +
Sbjct: 182 RTISRVSEFMSDSLPNRFDRLPVTYHLFLEQTKHVCKYHARRQQL 226
>AC024204-7|AAM97982.1| 614|Caenorhabditis elegans Abnormal cell
lineage protein 45,isoform b protein.
Length = 614
Score = 27.5 bits (58), Expect = 9.2
Identities = 17/42 (40%), Positives = 25/42 (59%)
Frame = -1
Query: 248 INKTSNVYRHHHHVIISPQSQSTSLNPVFDSPYPFLASRSSS 123
I +T V RH + +SPQ++++ L+P PYP RSSS
Sbjct: 319 IKRTGGVKRHP--MAVSPQNETSQLSP--SGPYP--RDRSSS 354
>AC024204-6|AAF36042.1| 813|Caenorhabditis elegans Abnormal cell
lineage protein 45,isoform a protein.
Length = 813
Score = 27.5 bits (58), Expect = 9.2
Identities = 17/42 (40%), Positives = 25/42 (59%)
Frame = -1
Query: 248 INKTSNVYRHHHHVIISPQSQSTSLNPVFDSPYPFLASRSSS 123
I +T V RH + +SPQ++++ L+P PYP RSSS
Sbjct: 277 IKRTGGVKRHP--MAVSPQNETSQLSP--SGPYP--RDRSSS 312
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,769,377
Number of Sequences: 27780
Number of extensions: 310216
Number of successful extensions: 869
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 827
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 868
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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