Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1683
         (771 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic pr...    25   0.88 
AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory recept...    23   3.6  
AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine recombi...    22   4.7  
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    22   6.2  

>U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic
           protein protein.
          Length = 372

 Score = 24.6 bits (51), Expect = 0.88
 Identities = 14/41 (34%), Positives = 25/41 (60%)
 Frame = +3

Query: 294 WDKVLEDIQKVNSEDFKTQALPLARIKKIMKLDEEVKMISA 416
           W K L   Q++ +E FK+  LPL  +K+  K++ +V++  A
Sbjct: 15  WGKSLSIPQQILNE-FKSTLLPLFGLKEQPKIEGKVQVPEA 54


>AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory receptor
           candidate 38 protein.
          Length = 436

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 10/45 (22%), Positives = 26/45 (57%)
 Frame = -3

Query: 583 GTMSIRKSN*SDFNIAVAMSLRCRVRLLFSSVCDQARNVSSCIKI 449
           G +S  ++  S  +I + ++    + +L+  +CD+A   S+C+++
Sbjct: 305 GLLSQLQAGFSTKDIGLTINAGLAIFILYF-ICDEAHYASNCLRV 348


>AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine
           recombinase protein.
          Length = 340

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 6/11 (54%), Positives = 10/11 (90%)
 Frame = +3

Query: 588 HEVKPTKPRYD 620
           + +KP+KP+YD
Sbjct: 125 YRIKPSKPKYD 135


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +2

Query: 359 VGSHQEDHETRRGGEDDISRGTGLIREGC*DFYTRANVASL 481
           +G + +D    RGG  D  RG G   E   +FY    V ++
Sbjct: 84  LGENNDDSGGGRGGGRDGDRGDGGGEEKKREFYIPPEVENV 124


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,840
Number of Sequences: 336
Number of extensions: 2914
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20753800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)