Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1683
         (771 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3B8.02 |php5||CCAAT-binding factor complex subunit Php5|Schi...   124   2e-29
SPAC17G8.03c |dpb3||DNA polymerase epsilon subunit Dpb3|Schizosa...    61   2e-10
SPCC622.08c |hta1||histone H2A alpha |Schizosaccharomyces pombe|...    32   0.10 
SPAC19G12.06c |hta2||histone H2A beta|Schizosaccharomyces pombe|...    32   0.10 
SPAC9E9.10c |cbh1|cbh|centromere binding protein |Schizosaccharo...    27   2.2  
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|...    27   3.0  
SPBC4.03c |||COPII-coated vesicle component Sfb3 |Schizosaccharo...    26   5.2  
SPCPJ732.03 |meu15||sequence orphan|Schizosaccharomyces pombe|ch...    26   6.9  
SPBC1289.09 |tim21||mitochondrial inner membrane presequence tra...    25   9.1  

>SPBC3B8.02 |php5||CCAAT-binding factor complex subunit
           Php5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 415

 Score =  124 bits (298), Expect = 2e-29
 Identities = 59/104 (56%), Positives = 81/104 (77%), Gaps = 2/104 (1%)
 Frame = +3

Query: 282 LQQFWDKVLEDIQKVNSEDFKTQALPLARIKKIMKLDEEVK--MISAEAPVLFAKAAEIF 455
           L ++W K ++ ++  + +  KT  LPLARIKK+MK D++VK  MISAEAP LFAK +EIF
Sbjct: 86  LAEYWQKTIDTLEH-DDQAVKTLHLPLARIKKVMKTDDDVKNKMISAEAPFLFAKGSEIF 144

Query: 456 IHELTLRAWSHTEENKRRTLQRNDIATAILKSDQFDFLIDIVPR 587
           I ELT+RAW H ++N+RRTLQR+DIA A+ KS+ +DFLIDI+ +
Sbjct: 145 IAELTMRAWLHAKKNQRRTLQRSDIANAVSKSEMYDFLIDIISK 188


>SPAC17G8.03c |dpb3||DNA polymerase epsilon subunit
           Dpb3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 199

 Score = 60.9 bits (141), Expect = 2e-10
 Identities = 34/104 (32%), Positives = 55/104 (52%)
 Frame = +3

Query: 321 KVNSEDFKTQALPLARIKKIMKLDEEVKMISAEAPVLFAKAAEIFIHELTLRAWSHTEEN 500
           K N   +     P+ARIKKIM+ D++V  ++   PV+ +KA E+F+  +   +   T  +
Sbjct: 13  KPNPATYWKSRFPVARIKKIMQADQDVGKVAQVTPVIMSKALELFMQSIIQESCKQTRLH 72

Query: 501 KRRTLQRNDIATAILKSDQFDFLIDIVPRHEVKPTKPRYDARRK 632
           + + +  + +  A+   +QFDFL DIV   E  P  P   A RK
Sbjct: 73  QAKRVTVSHLKHAVQSVEQFDFLQDIV---EKVPDAPPIKAERK 113


>SPCC622.08c |hta1||histone H2A alpha |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 132

 Score = 31.9 bits (69), Expect = 0.10
 Identities = 16/74 (21%), Positives = 34/74 (45%)
 Frame = +3

Query: 351 ALPLARIKKIMKLDEEVKMISAEAPVLFAKAAEIFIHELTLRAWSHTEENKRRTLQRNDI 530
           A P+ R+ ++++     + + A APV  A   E    E+   A +   +NK+  +    +
Sbjct: 26  AFPVGRVHRLLRKGNYAQRVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPRHL 85

Query: 531 ATAILKSDQFDFLI 572
             AI   ++ + L+
Sbjct: 86  QLAIRNDEELNKLL 99


>SPAC19G12.06c |hta2||histone H2A beta|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 131

 Score = 31.9 bits (69), Expect = 0.10
 Identities = 16/74 (21%), Positives = 34/74 (45%)
 Frame = +3

Query: 351 ALPLARIKKIMKLDEEVKMISAEAPVLFAKAAEIFIHELTLRAWSHTEENKRRTLQRNDI 530
           A P+ R+ ++++     + + A APV  A   E    E+   A +   +NK+  +    +
Sbjct: 26  AFPVGRVHRLLRKGNYAQRVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPRHL 85

Query: 531 ATAILKSDQFDFLI 572
             AI   ++ + L+
Sbjct: 86  QLAIRNDEELNKLL 99


>SPAC9E9.10c |cbh1|cbh|centromere binding protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 514

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = -2

Query: 632 FPAGVVTRFRRLDFMPRHYVDQEIELIRFQYSCRYVVALQ 513
           F  G + +FRR  ++ +  V+Q +E I+F+    Y V +Q
Sbjct: 126 FSNGWLDKFRRRHYIQQSAVNQALESIKFEVFREYPVHIQ 165


>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1402

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -1

Query: 174  WTFCSFFNQLHETNAPMFLFNYHSKLILKLCFGKL 70
            WTF  F+ Q++      +LF+Y   ++  L F  L
Sbjct: 1080 WTFTLFWYQIYNNFDANYLFDYTYVMLFNLIFSSL 1114


>SPBC4.03c |||COPII-coated vesicle component Sfb3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 22/79 (27%), Positives = 31/79 (39%), Gaps = 2/79 (2%)
 Frame = +2

Query: 461 RANVASLVA-YGG-K*KADSAAQRHSDSYIEIGSVRFPDRHSAAA*SQADETALRRPQES 634
           R NVA  +A YGG +     AAQ ++  YI+ GS   P    A     A    +      
Sbjct: 17  RQNVAGNIASYGGPEIDTQLAAQMNAQMYIQQGSAMAPQPRRARRHKDAHAYDMSLTDAE 76

Query: 635 PKHGSVLPPVSAAASGGPS 691
           P    V+ P    +   P+
Sbjct: 77  PALAPVMSPAIPPSMNYPT 95


>SPCPJ732.03 |meu15||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 150

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 327 NSEDFKTQALPLARIKKIMKL 389
           N ++ K Q LPL  IKKI K+
Sbjct: 16  NLQEVKPQVLPLEEIKKIYKI 36


>SPBC1289.09 |tim21||mitochondrial inner membrane presequence
           translocase complex subunit Tim21 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 223

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -2

Query: 581 HYVDQEIELIRFQYSCRYV 525
           HY D+  EL++    CRYV
Sbjct: 100 HYGDEAFELLKANEECRYV 118


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,728,407
Number of Sequences: 5004
Number of extensions: 48374
Number of successful extensions: 131
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)