Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1683
(771 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF024493-10|AAK68346.1| 232|Caenorhabditis elegans C. elegans N... 105 3e-23
AL132949-3|CAB61070.1| 179|Caenorhabditis elegans Hypothetical ... 69 3e-12
Z70753-7|CAD82914.1| 305|Caenorhabditis elegans Hypothetical pr... 44 2e-04
Z70753-6|CAA94762.1| 331|Caenorhabditis elegans Hypothetical pr... 44 2e-04
Z93388-8|CAB07656.1| 127|Caenorhabditis elegans Hypothetical pr... 31 1.2
Z92789-4|CAB07221.1| 127|Caenorhabditis elegans Hypothetical pr... 31 1.2
Z83245-10|CAB05838.1| 127|Caenorhabditis elegans Hypothetical p... 31 1.2
Z83245-6|CAB05836.1| 127|Caenorhabditis elegans Hypothetical pr... 31 1.2
Z82271-4|CAB05212.1| 127|Caenorhabditis elegans Hypothetical pr... 31 1.2
Z81495-2|CAB04056.1| 127|Caenorhabditis elegans Hypothetical pr... 31 1.2
Z81128-6|CAB03399.1| 127|Caenorhabditis elegans Hypothetical pr... 31 1.2
Z73102-8|CAA97414.1| 127|Caenorhabditis elegans Hypothetical pr... 31 1.2
Z70750-11|CAA94747.1| 127|Caenorhabditis elegans Hypothetical p... 31 1.2
X15633-1|CAA33641.1| 127|Caenorhabditis elegans histone protein... 31 1.2
U64845-8|AAC48024.1| 127|Caenorhabditis elegans Histone protein... 31 1.2
U64843-8|AAF98222.1| 127|Caenorhabditis elegans Histone protein... 31 1.2
U64843-5|AAF98219.1| 127|Caenorhabditis elegans Histone protein... 31 1.2
U58750-7|AAB00647.1| 127|Caenorhabditis elegans Histone protein... 31 1.2
U40934-9|AAA81686.1| 127|Caenorhabditis elegans Histone protein... 31 1.2
AF047656-4|AAC05100.1| 127|Caenorhabditis elegans Histone prote... 31 1.2
AC024696-8|AAK84512.1| 127|Caenorhabditis elegans Histone prote... 31 1.2
AC024696-5|AAK84506.1| 127|Caenorhabditis elegans Histone prote... 31 1.2
AL021487-5|CAA16350.1| 244|Caenorhabditis elegans Hypothetical ... 29 2.8
AF036687-2|AAB88311.2| 2224|Caenorhabditis elegans Hypothetical ... 29 2.8
L14433-6|AAA27974.2| 2107|Caenorhabditis elegans Hypothetical pr... 29 4.8
AC024808-4|AAK29924.1| 252|Caenorhabditis elegans Hypothetical ... 29 4.8
AL021487-4|CAA16351.1| 244|Caenorhabditis elegans Hypothetical ... 28 6.4
>AF024493-10|AAK68346.1| 232|Caenorhabditis elegans C. elegans
NFYC-1 protein protein.
Length = 232
Score = 105 bits (252), Expect = 3e-23
Identities = 49/113 (43%), Positives = 77/113 (68%), Gaps = 6/113 (5%)
Frame = +3
Query: 285 QQFWDKVLEDIQKVNSEDF----KTQALPLARIKKIMKLDEEVK--MISAEAPVLFAKAA 446
+ FW + + + +++ ED K ++P+AR+KKIM++D++V+ MI+++AP+ A+AA
Sbjct: 83 EDFWREKKQKMTEISEEDMLNKSKNMSVPMARVKKIMRIDDDVRNFMIASDAPIFMAQAA 142
Query: 447 EIFIHELTLRAWSHTEENKRRTLQRNDIATAILKSDQFDFLIDIVPRHEVKPT 605
E FI E+T W + E +RR LQ+ DIA+A+ KSDQFDFLID +P V T
Sbjct: 143 EFFIEEMTAMGWQYVSEARRRILQKADIASAVQKSDQFDFLIDFLPPKTVPTT 195
>AL132949-3|CAB61070.1| 179|Caenorhabditis elegans Hypothetical
protein Y53F4B.3 protein.
Length = 179
Score = 69.3 bits (162), Expect = 3e-12
Identities = 41/105 (39%), Positives = 64/105 (60%), Gaps = 5/105 (4%)
Frame = +3
Query: 309 EDIQKVNS--EDFKTQALPLARIKKIMKLDEEVKMISAEAPVLFAKAAEIFIHELTLRAW 482
ED++++ E+ LPL R+KK+++++ +V+M++ EA L AKAAE+FI EL+ A
Sbjct: 19 EDVREIEEHVEELVRSQLPLGRVKKVVRMNPDVEMLNNEALQLMAKAAELFIKELSNAAN 78
Query: 483 SHTEENKRRTLQRNDIATAILKSDQFDFLIDIV---PRHEVKPTK 608
+ KR+T+Q DI AI K+ F FL D + P+ E K K
Sbjct: 79 QNAALEKRKTVQTKDIDKAIKKTWAFAFLEDALDGWPKLEPKKRK 123
>Z70753-7|CAD82914.1| 305|Caenorhabditis elegans Hypothetical
protein F40F9.7b protein.
Length = 305
Score = 43.6 bits (98), Expect = 2e-04
Identities = 23/77 (29%), Positives = 36/77 (46%)
Frame = +3
Query: 339 FKTQALPLARIKKIMKLDEEVKMISAEAPVLFAKAAEIFIHELTLRAWSHTEENKRRTLQ 518
F T + RIKK+M+ DE++ + PV +A E F + A T+ +TL
Sbjct: 35 FSTAKIQPTRIKKVMQSDEDIGRMVQSVPVSIGRAMEHFAEKFLQAAAEATQFTSSKTLN 94
Query: 519 RNDIATAILKSDQFDFL 569
+ A+L + F FL
Sbjct: 95 PQHMKQAVLNTPHFSFL 111
>Z70753-6|CAA94762.1| 331|Caenorhabditis elegans Hypothetical
protein F40F9.7a protein.
Length = 331
Score = 43.6 bits (98), Expect = 2e-04
Identities = 23/77 (29%), Positives = 36/77 (46%)
Frame = +3
Query: 339 FKTQALPLARIKKIMKLDEEVKMISAEAPVLFAKAAEIFIHELTLRAWSHTEENKRRTLQ 518
F T + RIKK+M+ DE++ + PV +A E F + A T+ +TL
Sbjct: 61 FSTAKIQPTRIKKVMQSDEDIGRMVQSVPVSIGRAMEHFAEKFLQAAAEATQFTSSKTLN 120
Query: 519 RNDIATAILKSDQFDFL 569
+ A+L + F FL
Sbjct: 121 PQHMKQAVLNTPHFSFL 137
>Z93388-8|CAB07656.1| 127|Caenorhabditis elegans Hypothetical
protein T10C6.12 protein.
Length = 127
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/72 (20%), Positives = 33/72 (45%)
Frame = +3
Query: 357 PLARIKKIMKLDEEVKMISAEAPVLFAKAAEIFIHELTLRAWSHTEENKRRTLQRNDIAT 536
P+ R+ +I++ + + A APV A E E+ A + +NK+ + +
Sbjct: 28 PVGRLHRILRKGNYAQRVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIAPRHLQL 87
Query: 537 AILKSDQFDFLI 572
A+ ++ + L+
Sbjct: 88 AVRNDEELNKLL 99
>Z92789-4|CAB07221.1| 127|Caenorhabditis elegans Hypothetical
protein H02I12.7 protein.
Length = 127
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/72 (20%), Positives = 33/72 (45%)
Frame = +3
Query: 357 PLARIKKIMKLDEEVKMISAEAPVLFAKAAEIFIHELTLRAWSHTEENKRRTLQRNDIAT 536
P+ R+ +I++ + + A APV A E E+ A + +NK+ + +
Sbjct: 28 PVGRLHRILRKGNYAQRVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIAPRHLQL 87
Query: 537 AILKSDQFDFLI 572
A+ ++ + L+
Sbjct: 88 AVRNDEELNKLL 99
>Z83245-10|CAB05838.1| 127|Caenorhabditis elegans Hypothetical
protein ZK131.10 protein.
Length = 127
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/72 (20%), Positives = 33/72 (45%)
Frame = +3
Query: 357 PLARIKKIMKLDEEVKMISAEAPVLFAKAAEIFIHELTLRAWSHTEENKRRTLQRNDIAT 536
P+ R+ +I++ + + A APV A E E+ A + +NK+ + +
Sbjct: 28 PVGRLHRILRKGNYAQRVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIAPRHLQL 87
Query: 537 AILKSDQFDFLI 572
A+ ++ + L+
Sbjct: 88 AVRNDEELNKLL 99
>Z83245-6|CAB05836.1| 127|Caenorhabditis elegans Hypothetical
protein ZK131.6 protein.
Length = 127
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/72 (20%), Positives = 33/72 (45%)
Frame = +3
Query: 357 PLARIKKIMKLDEEVKMISAEAPVLFAKAAEIFIHELTLRAWSHTEENKRRTLQRNDIAT 536
P+ R+ +I++ + + A APV A E E+ A + +NK+ + +
Sbjct: 28 PVGRLHRILRKGNYAQRVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIAPRHLQL 87
Query: 537 AILKSDQFDFLI 572
A+ ++ + L+
Sbjct: 88 AVRNDEELNKLL 99
>Z82271-4|CAB05212.1| 127|Caenorhabditis elegans Hypothetical
protein F54E12.5 protein.
Length = 127
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/72 (20%), Positives = 33/72 (45%)
Frame = +3
Query: 357 PLARIKKIMKLDEEVKMISAEAPVLFAKAAEIFIHELTLRAWSHTEENKRRTLQRNDIAT 536
P+ R+ +I++ + + A APV A E E+ A + +NK+ + +
Sbjct: 28 PVGRLHRILRKGNYAQRVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIAPRHLQL 87
Query: 537 AILKSDQFDFLI 572
A+ ++ + L+
Sbjct: 88 AVRNDEELNKLL 99
>Z81495-2|CAB04056.1| 127|Caenorhabditis elegans Hypothetical
protein F08G2.2 protein.
Length = 127
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/72 (20%), Positives = 33/72 (45%)
Frame = +3
Query: 357 PLARIKKIMKLDEEVKMISAEAPVLFAKAAEIFIHELTLRAWSHTEENKRRTLQRNDIAT 536
P+ R+ +I++ + + A APV A E E+ A + +NK+ + +
Sbjct: 28 PVGRLHRILRKGNYAQRVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIAPRHLQL 87
Query: 537 AILKSDQFDFLI 572
A+ ++ + L+
Sbjct: 88 AVRNDEELNKLL 99
>Z81128-6|CAB03399.1| 127|Caenorhabditis elegans Hypothetical
protein T23D8.6 protein.
Length = 127
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/72 (20%), Positives = 33/72 (45%)
Frame = +3
Query: 357 PLARIKKIMKLDEEVKMISAEAPVLFAKAAEIFIHELTLRAWSHTEENKRRTLQRNDIAT 536
P+ R+ +I++ + + A APV A E E+ A + +NK+ + +
Sbjct: 28 PVGRLHRILRKGNYAQRVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIAPRHLQL 87
Query: 537 AILKSDQFDFLI 572
A+ ++ + L+
Sbjct: 88 AVRNDEELNKLL 99
>Z73102-8|CAA97414.1| 127|Caenorhabditis elegans Hypothetical
protein B0035.7 protein.
Length = 127
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/72 (20%), Positives = 33/72 (45%)
Frame = +3
Query: 357 PLARIKKIMKLDEEVKMISAEAPVLFAKAAEIFIHELTLRAWSHTEENKRRTLQRNDIAT 536
P+ R+ +I++ + + A APV A E E+ A + +NK+ + +
Sbjct: 28 PVGRLHRILRKGNYAQRVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIAPRHLQL 87
Query: 537 AILKSDQFDFLI 572
A+ ++ + L+
Sbjct: 88 AVRNDEELNKLL 99
>Z70750-11|CAA94747.1| 127|Caenorhabditis elegans Hypothetical
protein C50F4.13 protein.
Length = 127
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/72 (20%), Positives = 33/72 (45%)
Frame = +3
Query: 357 PLARIKKIMKLDEEVKMISAEAPVLFAKAAEIFIHELTLRAWSHTEENKRRTLQRNDIAT 536
P+ R+ +I++ + + A APV A E E+ A + +NK+ + +
Sbjct: 28 PVGRLHRILRKGNYAQRVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIAPRHLQL 87
Query: 537 AILKSDQFDFLI 572
A+ ++ + L+
Sbjct: 88 AVRNDEELNKLL 99
>X15633-1|CAA33641.1| 127|Caenorhabditis elegans histone protein
protein.
Length = 127
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/72 (20%), Positives = 33/72 (45%)
Frame = +3
Query: 357 PLARIKKIMKLDEEVKMISAEAPVLFAKAAEIFIHELTLRAWSHTEENKRRTLQRNDIAT 536
P+ R+ +I++ + + A APV A E E+ A + +NK+ + +
Sbjct: 28 PVGRLHRILRKGNYAQRVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIAPRHLQL 87
Query: 537 AILKSDQFDFLI 572
A+ ++ + L+
Sbjct: 88 AVRNDEELNKLL 99
>U64845-8|AAC48024.1| 127|Caenorhabditis elegans Histone protein 7
protein.
Length = 127
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/72 (20%), Positives = 33/72 (45%)
Frame = +3
Query: 357 PLARIKKIMKLDEEVKMISAEAPVLFAKAAEIFIHELTLRAWSHTEENKRRTLQRNDIAT 536
P+ R+ +I++ + + A APV A E E+ A + +NK+ + +
Sbjct: 28 PVGRLHRILRKGNYAQRVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIAPRHLQL 87
Query: 537 AILKSDQFDFLI 572
A+ ++ + L+
Sbjct: 88 AVRNDEELNKLL 99
>U64843-8|AAF98222.1| 127|Caenorhabditis elegans Histone protein 19
protein.
Length = 127
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/72 (20%), Positives = 33/72 (45%)
Frame = +3
Query: 357 PLARIKKIMKLDEEVKMISAEAPVLFAKAAEIFIHELTLRAWSHTEENKRRTLQRNDIAT 536
P+ R+ +I++ + + A APV A E E+ A + +NK+ + +
Sbjct: 28 PVGRLHRILRKGNYAQRVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIAPRHLQL 87
Query: 537 AILKSDQFDFLI 572
A+ ++ + L+
Sbjct: 88 AVRNDEELNKLL 99
>U64843-5|AAF98219.1| 127|Caenorhabditis elegans Histone protein 21
protein.
Length = 127
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/72 (20%), Positives = 33/72 (45%)
Frame = +3
Query: 357 PLARIKKIMKLDEEVKMISAEAPVLFAKAAEIFIHELTLRAWSHTEENKRRTLQRNDIAT 536
P+ R+ +I++ + + A APV A E E+ A + +NK+ + +
Sbjct: 28 PVGRLHRILRKGNYAQRVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIAPRHLQL 87
Query: 537 AILKSDQFDFLI 572
A+ ++ + L+
Sbjct: 88 AVRNDEELNKLL 99
>U58750-7|AAB00647.1| 127|Caenorhabditis elegans Histone protein 61
protein.
Length = 127
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/72 (20%), Positives = 33/72 (45%)
Frame = +3
Query: 357 PLARIKKIMKLDEEVKMISAEAPVLFAKAAEIFIHELTLRAWSHTEENKRRTLQRNDIAT 536
P+ R+ +I++ + + A APV A E E+ A + +NK+ + +
Sbjct: 28 PVGRLHRILRKGNYAQRVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIAPRHLQL 87
Query: 537 AILKSDQFDFLI 572
A+ ++ + L+
Sbjct: 88 AVRNDEELNKLL 99
>U40934-9|AAA81686.1| 127|Caenorhabditis elegans Histone protein 30
protein.
Length = 127
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/72 (20%), Positives = 33/72 (45%)
Frame = +3
Query: 357 PLARIKKIMKLDEEVKMISAEAPVLFAKAAEIFIHELTLRAWSHTEENKRRTLQRNDIAT 536
P+ R+ +I++ + + A APV A E E+ A + +NK+ + +
Sbjct: 28 PVGRLHRILRKGNYAQRVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIAPRHLQL 87
Query: 537 AILKSDQFDFLI 572
A+ ++ + L+
Sbjct: 88 AVRNDEELNKLL 99
>AF047656-4|AAC05100.1| 127|Caenorhabditis elegans Histone protein
33 protein.
Length = 127
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/72 (20%), Positives = 33/72 (45%)
Frame = +3
Query: 357 PLARIKKIMKLDEEVKMISAEAPVLFAKAAEIFIHELTLRAWSHTEENKRRTLQRNDIAT 536
P+ R+ +I++ + + A APV A E E+ A + +NK+ + +
Sbjct: 28 PVGRLHRILRKGNYAQRVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIAPRHLQL 87
Query: 537 AILKSDQFDFLI 572
A+ ++ + L+
Sbjct: 88 AVRNDEELNKLL 99
>AC024696-8|AAK84512.1| 127|Caenorhabditis elegans Histone protein
53 protein.
Length = 127
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/72 (20%), Positives = 33/72 (45%)
Frame = +3
Query: 357 PLARIKKIMKLDEEVKMISAEAPVLFAKAAEIFIHELTLRAWSHTEENKRRTLQRNDIAT 536
P+ R+ +I++ + + A APV A E E+ A + +NK+ + +
Sbjct: 28 PVGRLHRILRKGNYAQRVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIAPRHLQL 87
Query: 537 AILKSDQFDFLI 572
A+ ++ + L+
Sbjct: 88 AVRNDEELNKLL 99
>AC024696-5|AAK84506.1| 127|Caenorhabditis elegans Histone protein
51 protein.
Length = 127
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/72 (20%), Positives = 33/72 (45%)
Frame = +3
Query: 357 PLARIKKIMKLDEEVKMISAEAPVLFAKAAEIFIHELTLRAWSHTEENKRRTLQRNDIAT 536
P+ R+ +I++ + + A APV A E E+ A + +NK+ + +
Sbjct: 28 PVGRLHRILRKGNYAQRVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIAPRHLQL 87
Query: 537 AILKSDQFDFLI 572
A+ ++ + L+
Sbjct: 88 AVRNDEELNKLL 99
>AL021487-5|CAA16350.1| 244|Caenorhabditis elegans Hypothetical
protein Y45F10B.9 protein.
Length = 244
Score = 29.5 bits (63), Expect = 2.8
Identities = 21/86 (24%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
Frame = +3
Query: 300 KVL-EDIQKVNSEDFKTQALPLARIKKIMKLDEEVKMISAEAPVLFAKAAEIFIHELTLR 476
K+L E++ K+ ++ KT+ + + +++ DE++K I E ++ + + F ELT
Sbjct: 100 KILDEELDKLEAKISKTEESLVQSVSMLLEKDEQLKTIRKEMKIMDDERS-AFDQELTRL 158
Query: 477 AWSHTEENKRRTLQRNDIATAILKSD 554
S E K R + L D
Sbjct: 159 KTSRLENEKSSLASRVECTICYLSYD 184
>AF036687-2|AAB88311.2| 2224|Caenorhabditis elegans Hypothetical
protein C08G9.2 protein.
Length = 2224
Score = 29.5 bits (63), Expect = 2.8
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +1
Query: 127 RCVCLVKLVEKTTKCPCASLCLLSKQRRLPRPKKWTLMLP 246
R C+ K + +CP A +C+L R+ P KW L +P
Sbjct: 1796 RSECICKSACEHVECPNAQVCIL---RKADCPNKWCLPVP 1832
>L14433-6|AAA27974.2| 2107|Caenorhabditis elegans Hypothetical protein
C50C3.2 protein.
Length = 2107
Score = 28.7 bits (61), Expect = 4.8
Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = +3
Query: 480 WSHTEEN-KRRTLQRNDIATAILKSDQFD 563
W+H EE +RR + ND + IL +QFD
Sbjct: 1217 WNHLEEELRRREVDLNDSMSQILIDEQFD 1245
>AC024808-4|AAK29924.1| 252|Caenorhabditis elegans Hypothetical
protein Y53G8AM.7 protein.
Length = 252
Score = 28.7 bits (61), Expect = 4.8
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -1
Query: 129 PMFLFNYHSKLILKLCFGKLL 67
PM +FN S L + +CFG LL
Sbjct: 122 PMIIFNTSSALSISICFGNLL 142
>AL021487-4|CAA16351.1| 244|Caenorhabditis elegans Hypothetical
protein Y45F10B.8 protein.
Length = 244
Score = 28.3 bits (60), Expect = 6.4
Identities = 20/86 (23%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
Frame = +3
Query: 300 KVLED-IQKVNSEDFKTQALPLARIKKIMKLDEEVKMISAEAPVLFAKAAEIFIHELTLR 476
K+L++ + K+ ++ KT+ + + +++ DE++K I E ++ + + F ELT
Sbjct: 100 KILDEKLDKLEAKISKTEESLVQSVSMLLEKDEQLKTIRKEMKIMDDERS-AFDQELTRL 158
Query: 477 AWSHTEENKRRTLQRNDIATAILKSD 554
S E K R + L D
Sbjct: 159 KTSRLENEKSSLASRVECTICYLSYD 184
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,542,261
Number of Sequences: 27780
Number of extensions: 289239
Number of successful extensions: 728
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 697
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 727
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1851132448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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