Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1683
         (771 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    28   0.084
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    28   0.084
X91509-1|CAA62809.1|  103|Apis mellifera histone H4 protein.           24   1.8  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    22   5.5  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 28.3 bits (60), Expect = 0.084
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -2

Query: 239 ISVHFFGRGNRRCLLSRHKEAHGHFVVF 156
           +SVH  G    RC +S H +A  HF+ +
Sbjct: 340 LSVHLGGNAEFRCEVSTHPQAGPHFITW 367


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 28.3 bits (60), Expect = 0.084
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -2

Query: 239 ISVHFFGRGNRRCLLSRHKEAHGHFVVF 156
           +SVH  G    RC +S H +A  HF+ +
Sbjct: 340 LSVHLGGNAEFRCEVSTHPQAGPHFITW 367


>X91509-1|CAA62809.1|  103|Apis mellifera histone H4 protein.
          Length = 103

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 9/32 (28%), Positives = 19/32 (59%)
 Frame = +3

Query: 447 EIFIHELTLRAWSHTEENKRRTLQRNDIATAI 542
           ++F+  +   A ++TE  KR+T+   D+  A+
Sbjct: 60  KVFLENVIRDAVTYTEHTKRKTVTAMDVVYAL 91



 Score = 22.6 bits (46), Expect = 4.2
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +2

Query: 266 GGAANPPAVLGQSLRGHTES*FRRL 340
           GGA     VLG +++G T+   RRL
Sbjct: 14  GGAKRHRKVLGDNIQGITKPAIRRL 38


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -2

Query: 365 SQRQSLGLEVFGINFLYVL 309
           S+ + +G EVF +NF+ V+
Sbjct: 203 SEFRRMGREVFAVNFMNVM 221


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,311
Number of Sequences: 438
Number of extensions: 3338
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24154023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)