Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1682
         (547 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    23   1.7  
EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    21   5.3  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          21   5.3  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    21   5.3  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   7.0  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    21   9.3  

>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +2

Query: 200 GSQISTGSNNPNKDVEVSSPPDDTVS 277
           GS +S   N PNK      PP+  +S
Sbjct: 55  GSLLSPSGNTPNKSSTSPYPPNHPLS 80


>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 21.4 bits (43), Expect = 5.3
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = +2

Query: 20  SAAADPSPCVFIEYKILYTFIY 85
           S   D  PCVF    IL  FI+
Sbjct: 227 SLVEDTLPCVFFLGSILIFFIF 248


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.4 bits (43), Expect = 5.3
 Identities = 7/24 (29%), Positives = 13/24 (54%)
 Frame = +1

Query: 76  IYLSIITKHCRYKIIVFFVFSNKF 147
           +Y  ++ K C  + I+F    NK+
Sbjct: 755 LYKDLVAKRCEERGILFVPIPNKY 778


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
          protein.
          Length = 351

 Score = 21.4 bits (43), Expect = 5.3
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -3

Query: 50 IHKEKDPPPPNSAA 9
          I++E  PP P SAA
Sbjct: 6  IYEESPPPAPQSAA 19


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
          protein protein.
          Length = 1156

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +2

Query: 5  PRPPNSAAADPSP 43
          P PP   AA P+P
Sbjct: 45 PAPPEEEAASPTP 57


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 9/26 (34%), Positives = 11/26 (42%)
 Frame = -2

Query: 507 WLAAKSQHFTLLSVEAIKTFVPSSCQ 430
           +L  K    TLL         PS+CQ
Sbjct: 625 FLKVKENEITLLVATVRHVMAPSTCQ 650


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,451
Number of Sequences: 336
Number of extensions: 3018
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13411456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)