Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1679
         (610 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomy...    26   5.0  
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    25   6.5  
SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces p...    25   8.7  

>SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1010

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = -3

Query: 185 QRANAIFLMHNMRSFFDFE-IMNFVH 111
           +RA +I   HN++S FD E I  FV+
Sbjct: 887 ERATSIMTKHNLKSSFDIEAIKEFVN 912


>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2310

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = -1

Query: 232 NYFSAPRRAPVTYTTVKGPMQFFSCIICEVFLTSK 128
           NYF   +R P  + +  G + F  C++  +  TS+
Sbjct: 488 NYFKLKKRDPQQFRSASGRLGFMVCLLEILSFTSR 522


>SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 531

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -1

Query: 418 GTEVIMSIYWLLKAPEYLVDSGKDE 344
           G   ++ I +L ++P YL+  GKDE
Sbjct: 193 GIITMIGILFLPESPRYLIQVGKDE 217


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,282,948
Number of Sequences: 5004
Number of extensions: 43521
Number of successful extensions: 84
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)