Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1679
         (610 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73102-13|CAA97405.1|  836|Caenorhabditis elegans Hypothetical p...    31   0.64 
AF125956-4|AAD14723.1|  353|Caenorhabditis elegans Serpentine re...    28   4.5  

>Z73102-13|CAA97405.1|  836|Caenorhabditis elegans Hypothetical
           protein B0035.12 protein.
          Length = 836

 Score = 31.1 bits (67), Expect = 0.64
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -2

Query: 291 NIHYQTIEGHAGALVTEIDIITSVRRVGHR 202
           N+H+Q  +    AL ++   +TSVRRV H+
Sbjct: 689 NVHFQATDDELKALFSKFGTVTSVRRVTHK 718


>AF125956-4|AAD14723.1|  353|Caenorhabditis elegans Serpentine
           receptor, class h protein78 protein.
          Length = 353

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
 Frame = +1

Query: 37  IFYLIS*LIAFINAFNI-CLYQ*HSVCTKFIISKSKKLRILCMRKIALAL*LSCRSPVPY 213
           +F++I   I  IN F I C+Y       KF  +K+KKL+I   R I + + +     +P 
Sbjct: 217 VFFVIE--ILQINYFVIYCIYNLFFSSNKFTSAKTKKLQISFFRSIVMQVSIPLLFLIPI 274

Query: 214 AAH*SNYVDFCY*GACMAFYCLV 282
               +  + F Y    +  Y ++
Sbjct: 275 FIIMTTSIAFGYYNQALTNYTII 297


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,349,251
Number of Sequences: 27780
Number of extensions: 237338
Number of successful extensions: 499
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 499
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1311096392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)