Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1677
         (559 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ969955-1|CAI94742.1|  160|Tribolium castaneum torso-like prote...    22   3.1  
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        21   7.2  

>AJ969955-1|CAI94742.1|  160|Tribolium castaneum torso-like protein
           protein.
          Length = 160

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 16/71 (22%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
 Frame = +3

Query: 3   HYYILITIIKFRETVSYMNKYNSNH*TMNFPS-TFR*FSINLRKKVLNISQQCIDYFVTS 179
           H Y+L+ + +FR++V  ++K  +N   M+  +  F    +     VL   ++   +F+ S
Sbjct: 39  HCYVLVRLARFRDSVK-LSKIPNNVNLMDVVAREFDKIQVGDVSSVLKFIRKYGSHFIES 97

Query: 180 FSLQE*LFE*F 212
           +     L++ F
Sbjct: 98  YVTGNALYQVF 108


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +3

Query: 270 NRDKL*ITNTITRGIRPCV 326
           N  +L I      GIRPCV
Sbjct: 57  NHIRLKIVEMAANGIRPCV 75


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,487
Number of Sequences: 336
Number of extensions: 2028
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 13681771
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)