Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1677
         (559 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   1.6  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   2.8  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    21   6.4  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           21   6.4  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   6.4  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -1

Query: 160 IHCCEMFKTFFRRFIE 113
           +H CE  K FFRR I+
Sbjct: 81  VHSCEGCKGFFRRSIQ 96


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +1

Query: 424 GPLTHSHTYITQKLTSYHY 480
           GP  H H + TQ L   HY
Sbjct: 348 GPPHHHHHHQTQSLQHLHY 366


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +3

Query: 48  SYMNKYNSNH*TMNFPSTFR*FSINLRK 131
           +Y NKYN N+   N    ++ + IN+ +
Sbjct: 99  NYNNKYNYNNNNYNKKLYYKNYIINIEQ 126


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 8/31 (25%), Positives = 18/31 (58%)
 Frame = +1

Query: 196 DYLNDSTFYISDSRLYGYYYITVCGTEINFR 288
           D+  D   ++  ++L  Y Y ++  ++IN+R
Sbjct: 490 DHEYDQNVWVLSNKLAMYLYGSIDSSKINYR 520


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +3

Query: 444 HIHYTKINIIPLFS 485
           HIHY   +I P+F+
Sbjct: 5   HIHYQHYHITPVFT 18


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,753
Number of Sequences: 438
Number of extensions: 2956
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16072521
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)